Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K06
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 88 1e-17
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 88 1e-17
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 88 1e-17
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 88 1e-17
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 88 1e-17
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 46 4e-05
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 4.8
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 4.8
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 4.8
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 4.8
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 4.8
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 4.8
U83115-1|AAB53791.1| 1637|Homo sapiens non-lens beta gamma-cryst... 29 6.3
AL390074-1|CAH72091.1| 1723|Homo sapiens absent in melanoma 1 pr... 29 6.3
AL359292-2|CAI21046.1| 1723|Homo sapiens absent in melanoma 1 pr... 29 6.3
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -3
Query: 366 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 187
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 186 AQYEKRAMELLKVSKDKRATEVLEATIGHTHPR 88
A YE+RAMELLKVSKDKRA + ++ +G TH R
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVG-THIR 82
Score = 54.8 bits (126), Expect = 1e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
L+ K LK +K+R+GTHIRAKRKREELSNV A MRK
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -3
Query: 366 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 187
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 186 AQYEKRAMELLKVSKDKRATEVLEATIGHTHPR 88
A YE+RAMELLKVSKDKRA + ++ +G TH R
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVG-THIR 82
Score = 54.8 bits (126), Expect = 1e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
L+ K LK +K+R+GTHIRAKRKREELSNV A MRK
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -3
Query: 366 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 187
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 186 AQYEKRAMELLKVSKDKRATEVLEATIGHTHPR 88
A YE+RAMELLKVSKDKRA + ++ +G TH R
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVG-THIR 82
Score = 54.8 bits (126), Expect = 1e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
L+ K LK +K+R+GTHIRAKRKREELSNV A MRK
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -3
Query: 366 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 187
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 186 AQYEKRAMELLKVSKDKRATEVLEATIGHTHPR 88
A YE+RAMELLKVSKDKRA + ++ +G TH R
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVG-THIR 82
Score = 54.8 bits (126), Expect = 1e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
L+ K LK +K+R+GTHIRAKRKREELSNV A MRK
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 87.8 bits (208), Expect = 1e-17
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -3
Query: 366 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 187
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 186 AQYEKRAMELLKVSKDKRATEVLEATIGHTHPR 88
A YE+RAMELLKVSKDKRA + ++ +G TH R
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVG-THIR 82
Score = 54.8 bits (126), Expect = 1e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
L+ K LK +K+R+GTHIRAKRKREELSNV A MRK
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 46.4 bits (105), Expect = 4e-05
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSN 60
L+ K LK +K+R+GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -3
Query: 312 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>U83115-1|AAB53791.1| 1637|Homo sapiens non-lens beta gamma-crystallin
like protein protein.
Length = 1637
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -3
Query: 231 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHT 97
+SK +LV ++ G QY++ + L VSK+K T+V EA + +T
Sbjct: 1594 YSKLKPNLVLDIKGGTQYDQNHIILNTVSKEK-FTQVWEAMVLYT 1637
>AL390074-1|CAH72091.1| 1723|Homo sapiens absent in melanoma 1
protein.
Length = 1723
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -3
Query: 231 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHT 97
+SK +LV ++ G QY++ + L VSK+K T+V EA + +T
Sbjct: 1680 YSKLKPNLVLDIKGGTQYDQNHIILNTVSKEK-FTQVWEAMVLYT 1723
>AL359292-2|CAI21046.1| 1723|Homo sapiens absent in melanoma 1
protein.
Length = 1723
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -3
Query: 231 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHT 97
+SK +LV ++ G QY++ + L VSK+K T+V EA + +T
Sbjct: 1680 YSKLKPNLVLDIKGGTQYDQNHIILNTVSKEK-FTQVWEAMVLYT 1723
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,840,689
Number of Sequences: 237096
Number of extensions: 971656
Number of successful extensions: 1794
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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