Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K06
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    71   3e-13
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    31   0.25 
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    30   0.58 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    30   0.58 
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.4  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.5  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   5.5  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   5.5  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   5.5  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   5.5  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    26   9.5  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 39/87 (44%), Positives = 56/87 (64%)
 Frame = -3

Query: 348 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 169
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 168 AMELLKVSKDKRATEVLEATIGHTHPR 88
            +E+L++SKDKRA + L+  IG TH R
Sbjct: 59  VLEMLRISKDKRALKFLKRRIG-THRR 84



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 25/45 (55%), Positives = 27/45 (60%)
 Frame = -1

Query: 173 RGLWSYLRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
           R +   LR  K    LK LKRR+GTH RAK KREEL NV    RK
Sbjct: 57  RRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 267 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKD-KRATEVLEATIGHTHP 91
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ K  TE ++  + +   
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETKMKTEKIQGLLKYIDE 199

Query: 90  R 88
           R
Sbjct: 200 R 200


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 264 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQ 85
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++A  +   T+ +  P  
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALAIYVNTLKNV-PAA 737

Query: 84  EE 79
           EE
Sbjct: 738 EE 739


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 264 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQ 85
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++A  +   T+ +  P  
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALAIYVNTLKNV-PAA 734

Query: 84  EE 79
           EE
Sbjct: 735 EE 736


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -3

Query: 252 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 133
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -3

Query: 252 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 133
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 225 KFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHP 91
           +F +  V  ++     E +  +LLK+++DK  T +  AT+G   P
Sbjct: 583 QFTQIKVIAIIAEGVPENQTRKLLKIAEDKGVTLIGPATVGGIKP 627


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 379 SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 206
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 219 VRDLVREVVGHAQYEKRAMELLKV 148
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 378  QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 211
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 210  LVREVVGHAQYE 175
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 378  QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 211
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 210  LVREVVGHAQYE 175
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 379 SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 206
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 210 LVREVVGHAQYEKRAMELLKVSKDKRATEVL 118
           +V+++V + +YEK A ELL+V  ++    V+
Sbjct: 434 IVKDMVSNPKYEKNAQELLRVLSNQPIDPVM 464


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 230 CFV*RPFSLAGLILMALSVIPLRPADILVVLWPFRRPTAISKRGAMISD*QIRRKSIG 403
           C V   F+  GL +  LS+  L    ++   WP     ++SKR A +    I   SIG
Sbjct: 62  CAVVHYFNWIGLAVSGLSLTLLNVDKLIYFRWPLNYDRSMSKRRAAMFCLAIWAVSIG 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,760
Number of Sequences: 27780
Number of extensions: 152954
Number of successful extensions: 372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)