Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K06
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 66 1e-11
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 65 2e-11
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 64 3e-11
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 54 4e-08
At1g34590.1 68414.m04299 hypothetical protein 29 0.97
At5g28430.1 68418.m03453 hypothetical protein 27 5.2
At4g06603.1 68417.m01028 expressed protein 27 5.2
At3g60930.1 68416.m06816 expressed protein 27 5.2
At3g04910.1 68416.m00533 protein kinase family protein contains ... 27 5.2
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 27 6.8
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 65.7 bits (153), Expect = 1e-11
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = -3
Query: 342 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 163
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 162 ELLKVSKDKRATEVLEATIGHTHPR 88
ELLKV KDKRA +V + +G TH R
Sbjct: 62 ELLKVGKDKRALKVAKRKLG-THKR 85
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMR 42
L+ K LK KR+LGTH RAKRKREE+S+V +MR
Sbjct: 64 LKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 64.9 bits (151), Expect = 2e-11
Identities = 39/85 (45%), Positives = 49/85 (57%)
Frame = -3
Query: 342 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 163
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 162 ELLKVSKDKRATEVLEATIGHTHPR 88
ELLKV KDKRA +V + +G TH R
Sbjct: 62 ELLKVGKDKRALKVAKRKLG-THKR 85
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMR 42
L+ K LK KR+LGTH RAKRKREE+S+V +MR
Sbjct: 64 LKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 64.5 bits (150), Expect = 3e-11
Identities = 39/85 (45%), Positives = 49/85 (57%)
Frame = -3
Query: 342 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 163
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 162 ELLKVSKDKRATEVLEATIGHTHPR 88
ELLKV KDKRA +V + +G TH R
Sbjct: 58 ELLKVGKDKRALKVAKRKLG-THKR 81
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMR 42
L+ K LK KR+LGTH RAKRKREE+S+V +MR
Sbjct: 60 LKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = -3
Query: 342 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 163
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 162 ELLKVSKDKRAT 127
ELLKV+K K T
Sbjct: 62 ELLKVAKRKLGT 73
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -1
Query: 128 LKXLKRRLGTHIRAKRKREELSNVXAQMR 42
LK KR+LGTH RAKRKREE+S+V +MR
Sbjct: 64 LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 0.97
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 253
F+ + ++ AP E A GH++ + A + G+TD+A + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 253
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 253
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 253
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
>At3g04910.1 68416.m00533 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 246 GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQEE 79
G H +F +RE E R EL K+ + + + E+ GH H +EE
Sbjct: 520 GCGETHGRFEEITIRET------EVRLRELWKLQQQQESRELSSIDSGHNHSEEEE 569
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = -3
Query: 336 LRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMEL 157
L +G + SA +K I I +PA + KH+ V+ + + + K A++
Sbjct: 432 LGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKN 491
Query: 156 LKVSKDKRATEVLEATIG 103
K ++K+A A G
Sbjct: 492 KKKRENKKAAAAAAAASG 509
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,143,363
Number of Sequences: 28952
Number of extensions: 145834
Number of successful extensions: 371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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