Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K05
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   3.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.5  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   4.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.2  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 485 CQTEMALSRTYTFISMRTTTGLFPYRCTFTRSS 387
           C    + S + T   MRT +G  PYRC   + +
Sbjct: 55  CDRRFSQSSSVT-THMRTHSGERPYRCRLCKKA 86


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 485 CQTEMALSRTYTFISMRTTTGLFPYRCTFTRSS 387
           C    + S + T   MRT +G  PYRC   + +
Sbjct: 311 CDRRFSQSSSVT-THMRTHSGERPYRCRLCKKA 342


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 358 VRDDKLGVLQQDDNGRVTVLQRH 290
           V   K+ VLQQ+D   + +L+++
Sbjct: 7   VSPHKINVLQQNDRREIIILRKN 29


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -3

Query: 351 TINSAFYNKTTTDELQFCSDICDSNPQYSWLTWRSRDGAHSFCCD 217
           T    FY K      +F    CDSNP  +    R  DG   + CD
Sbjct: 363 TCPEGFYGKNC----EFSGYDCDSNPCQNGGVCRISDGG-GYICD 402


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 345 NSAFYNKTTTDELQFCSDIC 286
           N   + +T TDE  +  DIC
Sbjct: 94  NLLIHERTHTDERPYSCDIC 113


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 543 VVQLGHSVTVYTGTHGVLALPNRDGALQNIYLHFDENNNGAV 418
           +V+L H  +   G    + L     A ++I + F E  NG V
Sbjct: 243 IVKLSHCNSYVDGGRNEIILLCEKVAKEDIQVRFFEEKNGKV 284


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
 Frame = +1

Query: 397 VKVH--RYGNSPVVVLIE 444
           +K+H  RYG++P VVL E
Sbjct: 302 LKIHLRRYGHTPNVVLDE 319


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,095
Number of Sequences: 336
Number of extensions: 2771
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)