Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K05
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    33   0.033
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   3.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   3.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   8.6  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 399 KSTSVREQPRCCSHRNEGICSGERHLCLAVPKLHECLCXLSHCDRVERPS 548
           K +S  E+P CCS   +  CS ++  C +  K   C    + C   E+ S
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKS 278



 Score = 31.9 bits (69), Expect = 0.075
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 399 KSTSVREQPRCCSHRNEGICSGERHLCLAVPKLHECLCXLSHC 527
           KS    ++P CCS   +G CS E+  C +  K   C      C
Sbjct: 245 KSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSC 287



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 414 REQPRCCSHRNEGICSGERHLCLAVPKLHECLCXLSHCDRVERPS 548
           +E+  CCS +    CS E+  C +  K   C      C   E+PS
Sbjct: 242 QEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPS 286


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 471 GALQNIYLHFDENNNGAVPVPMYFYKVVYDATARTAV-AFVTINSAFYNKTTT 316
           G L N+Y HF ++++ AV +P  F  V     A+  V A +   S   +K TT
Sbjct: 725 GCLGNMYSHFIKSSSFAVVLPAIFVLVPSGFAAQGGVSAGLDTASQITSKNTT 777


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 414  VPMYFYKVVYDATARTAVAFVTINSAFYNKTTTDEL 307
            +P    +VV+D   R  + F  +NS   +K  TDEL
Sbjct: 1141 LPPQMSRVVHDTEKRLNMLFDRLNSNVLSKPLTDEL 1176


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 505 ACVXCHTVTELNDLLPXRGFQSPPVAGIDCPPLRG 609
           AC  C   T+ NDLL         +A ++ PP++G
Sbjct: 254 ACQLCADETKKNDLLAAFQEADSILAAVNKPPVKG 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,866
Number of Sequences: 5004
Number of extensions: 47164
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)