Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K05
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 31 0.72
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 30 1.7
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 29 3.8
09_04_0436 - 17558603-17559265,17559322-17559384 29 3.8
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 29 3.8
07_01_0888 + 7398538-7399405,7400232-7400333,7400463-7400641,740... 28 5.1
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178... 28 5.1
01_06_1643 - 38878597-38878725,38878818-38878934,38879118-388794... 28 5.1
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 28 6.7
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 28 6.7
12_02_1190 - 26814289-26814438,26814526-26814718,26814998-268152... 27 8.9
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 27 8.9
07_01_0157 + 1109499-1111022 27 8.9
04_04_0474 - 25498563-25498832 27 8.9
03_05_0309 + 22990117-22990286,22990371-22990557,22990763-229908... 27 8.9
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 155 EPKILNIDNTHKLVIYKQLEHSTKMFTGVGH*MASLR 45
E K+LN + HKL++ + HSTK ++ H + +LR
Sbjct: 738 EAKLLNKSHLHKLILDWNVNHSTKDYSQEEHILENLR 774
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 24 PCAMRNXSKRSHLVADARKHF 86
P AM N K HL+ADA+ HF
Sbjct: 675 PAAMNNLVKLRHLIADAKVHF 695
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 228 SCERHLATATLTTSIADSNHR--CRCKTVTRPLSSC 329
+CE+ L+ + SI+D NHR R + + +P ++C
Sbjct: 291 NCEKELSCVVMNRSISDDNHRQSPRRERMNKPSTTC 326
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 315 PLSSCCRTPSLSSRTLRLYELWHRRRPCKSTSVREQPRCCSHRNEGICSGER 470
P +S TPSLS RT H S +VR P CCS E I G++
Sbjct: 173 PNASATPTPSLSWRTTPPPCQRHPSSRA-SRAVRTTPPCCSSLAENIAQGKK 223
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 496 SFGTAKQRWRSPEHIPSFR*EQQ 428
SFG KQ+WR +++PS+ E Q
Sbjct: 678 SFGVLKQKWRILKYVPSYPPETQ 700
>07_01_0888 +
7398538-7399405,7400232-7400333,7400463-7400641,
7400899-7400959,7401207-7401444,7401649-7401802,
7401971-7402249
Length = 626
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 270 YSWLTWRSRDGAHSFCC 220
Y+WL WRS G CC
Sbjct: 534 YAWLLWRSGQGHELICC 550
>04_01_0156 -
1780395-1780686,1780773-1781248,1781263-1781678,
1781904-1782111
Length = 463
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 219 RSRSCERHLATATLTTSIADSNHRCRCKTVTRPLSSCCR 335
R + ER + T L + A+ +H C T + P + CR
Sbjct: 398 RHKEDERRVVTDALKKANAEIDHGCSSSTTSTPCGATCR 436
>01_06_1643 -
38878597-38878725,38878818-38878934,38879118-38879450,
38880366-38880758
Length = 323
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -3
Query: 393 VVYDATARTAVAFVTINS 340
VV+DA ARTA+AFVT+ +
Sbjct: 84 VVFDAGARTALAFVTLRA 101
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 361 SVRDDKLGVLQQDDNGRVTVLQRHL*FESAILVVNVAVARWRSQLLLRLH 212
++RD L ++ G T+L R + I +V++ V +W SQ L H
Sbjct: 677 AMRDPLLSSTKETVKGHGTILYREGSRPTGIWLVSIGVVKWTSQRLSSRH 726
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +3
Query: 228 SCERHLATATLTTSIADSNHRCRCKTVTRPLSSCCRTPSLSSRTLRL---YELWHRRRPC 398
+C T T TT + T P L+S +L L ++ WHR R
Sbjct: 47 ACSPPTTTHTTTTVTTTTTTASPAPVTTSPADVAWLKSQLASNSLPLLASHDAWHRLRKG 106
Query: 399 KSTSVREQPRCCSHRNEGI 455
+ REQ +R+ GI
Sbjct: 107 INPRTREQQLFDINRHHGI 125
>12_02_1190 -
26814289-26814438,26814526-26814718,26814998-26815233,
26815363-26815535,26815651-26815701,26816686-26817079
Length = 398
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 609 APQWRTINSGDWGAL--ESAXRKKVVQLGHSVTVYTGTHGVLALPNRDGALQNIYL 448
AP+W ++ DWG L ++ R V ++ T Y GT L P R A+ IY+
Sbjct: 96 APRWAEEDAVDWGLLLGDAYHRCGEVCAEYAKTFYLGTQ--LMTPERRKAVWAIYV 149
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +3
Query: 369 YELWHRRRPCKSTSVREQPRCCSHRNEGICSGERHLCLAVPKL 497
+E + + P S+S++E P CS +C HL + + +
Sbjct: 373 HESFSFKIPQDSSSLKESPESCSISAASLCEDHNHLSVLISNM 415
>07_01_0157 + 1109499-1111022
Length = 507
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 414 REQPRCCSHRNEGICS 461
R P CC HR++ +CS
Sbjct: 286 RPNPMCCKHRSQKVCS 301
>04_04_0474 - 25498563-25498832
Length = 89
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 495 VLALPNRDGALQNIYLHFDENNNGAVPVPMY 403
V +DGA+ + LH+DE PVP +
Sbjct: 37 VFRFETKDGAVGGLLLHYDERGFRVGPVPSF 67
>03_05_0309 +
22990117-22990286,22990371-22990557,22990763-22990849,
22991101-22991346
Length = 229
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 455 YTFISMRTTTGLF-PYRCTFTRSSTMPQ 375
YTF +M T G PY CTF T PQ
Sbjct: 178 YTFPNMSTILGPHHPYPCTFIYDQTEPQ 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,808
Number of Sequences: 37544
Number of extensions: 331487
Number of successful extensions: 1084
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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