Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K05
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 32 0.42
SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2) 31 0.74
SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6) 30 1.7
SB_38402| Best HMM Match : DM (HMM E-Value=6.1e-19) 30 1.7
SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19) 30 1.7
SB_32373| Best HMM Match : Cys_knot (HMM E-Value=8.9) 29 2.2
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 3.0
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_48931| Best HMM Match : HIG_1_N (HMM E-Value=6.5) 29 3.9
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.9
SB_45035| Best HMM Match : DUF1287 (HMM E-Value=5.1) 29 3.9
SB_44046| Best HMM Match : P19Arf_N (HMM E-Value=5.5) 28 5.2
SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_23273| Best HMM Match : ResIII (HMM E-Value=8.2) 28 5.2
SB_49438| Best HMM Match : LIM (HMM E-Value=3.1) 28 6.9
SB_38724| Best HMM Match : DUF1684 (HMM E-Value=2.2) 28 6.9
SB_14514| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 28 6.9
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8) 28 6.9
SB_19182| Best HMM Match : ResIII (HMM E-Value=0.46) 28 6.9
SB_7430| Best HMM Match : LIM (HMM E-Value=4.7) 28 6.9
SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23) 27 9.1
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05) 27 9.1
SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66) 27 9.1
SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4) 27 9.1
SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3) 27 9.1
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 31.9 bits (69), Expect = 0.42
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +3
Query: 219 RSRSC--ERHLATATLTTSIADSNHRCRCKTVTRPLSSCCRTPSLSSRTLRLYELWHRRR 392
R R C R + + T A + +C ++ ++ C +RTL + + H R
Sbjct: 4 RQRVCTERRQVLSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHETR 63
Query: 393 PCKSTSVREQPRCCSHR----NEGICSGERHL-CLAVP 491
+ R+ P C + +G C GE H+ C+ P
Sbjct: 64 GMYALERRQVPSCTCDKGFALKDGKCLGESHMPCVTQP 101
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Frame = +3
Query: 237 RHLATATLTTSIADSNHRCRCKTVTRPLSSCCRTPSLSSRTLRLYELWHRRRPCKSTSVR 416
R + + T A + +C ++ ++ C +RTL + + H R + R
Sbjct: 71 RQVPSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHETRGMYALERR 130
Query: 417 EQPRCCSHR----NEGICSGERHL-CLAVP 491
+ P C + +G C GE H+ C+ P
Sbjct: 131 QVPSCTCDKGFALKDGKCLGELHMPCVTQP 160
>SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
Length = 356
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 300 KTVTRPLSSCCRTPSLSSRTLRLYELWHRRRPCKSTS----VREQPRCCSHRNEGICSGE 467
KT +R RT + + +T+ ++ PC+S +R QP + +N + +
Sbjct: 154 KTSSRKSRDKSRTTTFTGQTVTAMTSRQKQNPCQSPQQPALLRRQPTAQNAKNASLIESQ 213
Query: 468 RHLCLAVPKLHECL 509
+ L+ P H CL
Sbjct: 214 VDVSLSKPNFHCCL 227
>SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSRTLRLYE-LWHRR-RPCKSTSVREQP 425
+S++RC C+ RP S+C C + + SSR + + +W R+ P ++R P
Sbjct: 643 ESDYRCLCEDCRRPYSTCDCGSAAPSSRLHDIKDRIWCRKNHPRVPATIRFDP 695
>SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)
Length = 917
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC CK +P S+C C T + SSR
Sbjct: 668 ESDYRCLCKDCGKPYSTCDCGTAAPSSR 695
>SB_38402| Best HMM Match : DM (HMM E-Value=6.1e-19)
Length = 118
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 405 TSVREQPRCCSHRNEGICS---GERHLCLAVPKLHECLC 512
TS + P+C RN G+CS G ++ C + +CLC
Sbjct: 6 TSSQRTPKCARCRNHGVCSSLKGHKYYC----RWRDCLC 40
>SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)
Length = 312
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 405 TSVREQPRCCSHRNEGICS---GERHLCLAVPKLHECLC 512
TS + P+C RN G+CS G ++ C + +CLC
Sbjct: 6 TSSQRTPKCARCRNHGVCSSLKGHKYYC----RWRDCLC 40
>SB_32373| Best HMM Match : Cys_knot (HMM E-Value=8.9)
Length = 349
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RCRC+ +P S+C C + + SSR
Sbjct: 138 ESDYRCRCEDCGKPYSTCDCGSAAPSSR 165
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 565 GIRXKEEGRSTRSQCDSXHRHSWSF--GTAKQRWRSPEHIPSFR*EQQRGCS 416
G+R KE+ T++ ++ R SWS + +W ++ P+ R ++++G +
Sbjct: 1154 GLRGKEQNNHTKAGANAGVRRSWSLKERPTELKWIQEKYEPTQRNKERKGAN 1205
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSCCRTPSLSSR 356
+S++RC C+ +P S+ C +P+ SSR
Sbjct: 876 ESDYRCLCEYCGKPYSTDCGSPAPSSR 902
>SB_48931| Best HMM Match : HIG_1_N (HMM E-Value=6.5)
Length = 267
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 103 NSSTQQKCLRASATRWLRFDXLRIAHGDG 17
++S QQ + T WLRFD + +GDG
Sbjct: 114 SASCQQVQYAVAVTEWLRFDTEDVNNGDG 142
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = +3
Query: 459 SGERHLCLAVPKLHECLC----XLSHCDRVERPSSLXRIPKPP 575
SG HLCL P H C+C L D + IP PP
Sbjct: 782 SGCSHLCLLNPTGHVCMCPYGMALDQLDNKTCEKNFTVIPTPP 824
>SB_45035| Best HMM Match : DUF1287 (HMM E-Value=5.1)
Length = 263
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+SN+RC C+ +P S+C C + + SSR
Sbjct: 14 ESNYRCLCEDCGKPYSTCDCGSAAPSSR 41
>SB_44046| Best HMM Match : P19Arf_N (HMM E-Value=5.5)
Length = 337
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC CK +P S+C C + + SSR
Sbjct: 68 ESDYRCLCKDCGKPYSTCDCGSAAPSSR 95
>SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
DS++RC C+ +P S+C C + + SSR
Sbjct: 896 DSDYRCLCEDCGKPYSTCDCGSAAPSSR 923
>SB_23273| Best HMM Match : ResIII (HMM E-Value=8.2)
Length = 288
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSCCRTPSLSSRTLRLYELWHRRRPCKSTSVREQPRCCSHRNE 449
+S++RC C+ +P S+C PS ++ +W R + RE+ R H +
Sbjct: 188 ESDYRCLCEDCGKPYSTCDGLPSSRLHDIK-DRIWCRPDSQQLEVFREEWRLIEHHRK 244
>SB_49438| Best HMM Match : LIM (HMM E-Value=3.1)
Length = 355
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSCCRTPS 344
+SN+RC C+ +P S+C PS
Sbjct: 291 ESNYRCLCEECGKPYSTCDGLPS 313
>SB_38724| Best HMM Match : DUF1684 (HMM E-Value=2.2)
Length = 373
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC C+ RP S+C C + + SSR
Sbjct: 85 ESDYRCLCEDCGRPYSTCDCGSTAPSSR 112
>SB_14514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC C+ +P S+C C + S SSR
Sbjct: 142 ESDYRCLCEDCGKPYSTCDCGSASPSSR 169
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSCCRTPS 344
+SN+RC C+ +P S+C PS
Sbjct: 601 ESNYRCLCEECGKPYSTCDGLPS 623
>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
Length = 252
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 336 TPSLSSRTLRLYELWHRRRPCK 401
TPS++S + + WHR PCK
Sbjct: 30 TPSVNSTNIIRHYYWHRYAPCK 51
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +3
Query: 243 LATATLTTSIADSN-------HRCRCKTVTRPLSSCCRTPSLSSRTLRLYELWHRRRPCK 401
+ T T T S+ +N HR + +++ TP ++S + + WHR PCK
Sbjct: 76 ITTGTATPSVNSTNIIRHYYWHRYAQPPPSSGITTGTATPRVNSTNIIRHYYWHRYAPCK 135
>SB_19182| Best HMM Match : ResIII (HMM E-Value=0.46)
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC C+ RP S+C C + + SSR
Sbjct: 476 ESDYRCLCEDCGRPYSACDCGSAAPSSR 503
>SB_7430| Best HMM Match : LIM (HMM E-Value=4.7)
Length = 130
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC C+ RP S+C C + + SSR
Sbjct: 14 ESDYRCLCEDCGRPYSTCDCGSTAPSSR 41
>SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23)
Length = 367
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 534 LGHSVTVYTGTHGVLALPNRDGALQN 457
+G+S+ +Y G+HGVLAL + L++
Sbjct: 311 VGNSLFIYDGSHGVLALEYTEEKLKH 336
>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1433
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSR 356
+S++RC+C+ +P S+C C + + SSR
Sbjct: 1162 ESDYRCQCEDWRKPYSTCDCGSAAPSSR 1189
>SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66)
Length = 822
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSCCRTPS 344
DS++RC C+ +P S+C PS
Sbjct: 658 DSDYRCLCEDCGKPYSTCDGLPS 680
>SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 76 VNIFVECSSCLYITNLCVLSMFKIFGSVKPSSDV 177
+ FV ++ L +TNLC+L++ + V P S +
Sbjct: 520 ITFFVNVTTNLSVTNLCLLTLDRYIAVVHPFSHI 553
>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -2
Query: 529 SQCDSXHRHSWSFGTAKQRWRSPEH 455
+ C H + W++G Q W P H
Sbjct: 301 NHCFPYHGYIWNYGALPQTWEDPGH 325
>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
Length = 906
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 276 DSNHRCRCKTVTRPLSSC-CRTPSLSSRTLRLY-ELWHR 386
+S++RC C+ +P S+C C + + SSR + +W++
Sbjct: 713 ESDYRCLCEDCRKPYSTCDCGSAAPSSRLHNIKGRIWYQ 751
>SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3)
Length = 861
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 333 RTPSLSSRTLRLYELWHRRRPCKSTSVREQPRCCSHRNEGICSGERHLCLAVPKLHE 503
+ PSL +R L + + + RRP +STS + R H+ +G+ CL+ P L E
Sbjct: 377 KKPSLIARVLSVLKRFKSRRPSRSTSA-DVVRQKFHQ-----AGQTKRCLSAPVLSE 427
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,961,692
Number of Sequences: 59808
Number of extensions: 385973
Number of successful extensions: 1444
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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