Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K05
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical p...    27   8.0  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   8.0  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    27   8.0  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   8.0  

>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 402 STSVREQPRCCSHRNEGICSGERHLCLA--VPKLHECLCXLSHCD 530
           +T+VR+  RC +H  EG+       CLA  VP    CL  L H +
Sbjct: 267 ATTVRDLLRCATHPGEGLTM----YCLACKVPVCSRCLQDLRHAN 307


>Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical
           protein Y69H2.9 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 424 PVVVLIEMKVYVLESAISVWQCQNSMSACV----XCHTV-TELNDLLPXRGFQSPPVAGI 588
           PV+ L EM+  + +S I+  + + +++ACV     C+T+ TE N         S  +A  
Sbjct: 199 PVISLSEMENVLNKSTIACSESKRAVNACVVEFFICYTMFTEANCTEKHENCVSKSMASA 258

Query: 589 DC 594
           DC
Sbjct: 259 DC 260


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 403 LLQGRLRCHSSYSRSVRDDKLGVLQQDDNGRVTVLQ 296
           +L+G    HSSYSRS + + + + + + +G+  VL+
Sbjct: 449 VLKGETTSHSSYSRSAKGN-IAIQEAEPSGKYIVLE 483


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 261 TTSIADSNHRCRCKTVTRPLSSCCRTP 341
           TTSI +    C C    +P  SC +TP
Sbjct: 19  TTSIREKRQSCGCAPKVQPSCSCQQTP 45


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 403 LLQGRLRCHSSYSRSVRDDKLGVLQQDDNGRVTVLQ 296
           +L+G    HSSYSRS + + + + + + +G+  VL+
Sbjct: 432 VLKGETTSHSSYSRSAKGN-IAIQEAEPSGKYIVLE 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,672
Number of Sequences: 27780
Number of extensions: 283609
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)