Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K05
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    29   2.4  
At3g10200.1 68416.m01221 dehydration-responsive protein-related ...    29   2.4  
At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containi...    28   4.2  
At4g39720.1 68417.m05622 VQ motif-containing protein contains PF...    28   5.6  
At3g61480.1 68416.m06885 expressed protein                             27   7.4  
At5g25280.2 68418.m02999 serine-rich protein-related contains so...    27   9.8  
At5g25280.1 68418.m02998 serine-rich protein-related contains so...    27   9.8  

>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 451 VYVLESAISVWQCQNSMSACVXCHTVTELNDLLPXRGFQSPPVAGIDCPPL 603
           V + ES ++V  C    +  + CH VT +  LLP             CPPL
Sbjct: 76  VSIPESGVNV--CPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPL 124


>At3g10200.1 68416.m01221 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 591

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +1

Query: 409 RYGNSPVVVLIEMKVYVLESAISVWQCQNSMSACVXCHTVTELNDLLPXRGFQSPPVAGI 588
           ++ N   +    + + + ES ++V  C    +  + CH VT ++ LLP            
Sbjct: 51  KFANKIELTYRRLPLVIPESGMNV--CPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLER 108

Query: 589 DCPPL 603
            CPPL
Sbjct: 109 HCPPL 113


>At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 637

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 394 LVKVHRYGNSPVVVLIEMKVYVLESAISVWQCQNSMSAC 510
           L  V +YG   +++   +K   LE A  VW C  S  AC
Sbjct: 493 LFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGAC 531


>At4g39720.1 68417.m05622 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 290

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 525 SVTVYTGTHG--VLALPNRDGALQNIYLHFDENNNGAVPVPMYF 400
           S++ +   H   V ++P      +N+ LHFD NNN ++  P YF
Sbjct: 31  SISAFFDHHNNHVSSIPTPQQNHRNL-LHFDHNNNNSLIPPNYF 73


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 19  HLHAQCATXRSEAI*WPTPVNIFVECSSCLYITNLCVLSMFKIFGSVKPSSDVQLYEFNF 198
           HL       R   +  P  ++++ +     Y+  +  +   KI+G + PSS   L + + 
Sbjct: 483 HLDQSSLLCRKVLLGKPMVMDVYQDYILVSYLPFIIHVYHVKIYGELTPSSKADL-QLST 541

Query: 199 VRELCVIAAEA 231
           VREL ++ A++
Sbjct: 542 VRELSIMTAKS 552


>At5g25280.2 68418.m02999 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 216 NRSRSCERHLATATLTTS----IADSNHRCRCKTVTRPLSSCC 332
           NRS S  R +A ++   S    I DS  RC C   T P S  C
Sbjct: 97  NRSISPNRSIAVSSNKPSNHHKIPDSRRRCMCSPTTHPGSFRC 139


>At5g25280.1 68418.m02998 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 216 NRSRSCERHLATATLTTS----IADSNHRCRCKTVTRPLSSCC 332
           NRS S  R +A ++   S    I DS  RC C   T P S  C
Sbjct: 97  NRSISPNRSIAVSSNKPSNHHKIPDSRRRCMCSPTTHPGSFRC 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,045
Number of Sequences: 28952
Number of extensions: 259384
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)