Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K04
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)                    30   2.2  
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)               30   2.2  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           28   8.9  

>SB_33764| Best HMM Match : DUF454 (HMM E-Value=8.8)
          Length = 124

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 SFVTTRTSVLNNRNNTIEITIARFNYSN 370
           SF+ T   ++NN+NN I IT+   N S+
Sbjct: 86  SFIITIVIIINNKNNIITITVTNTNSSS 113


>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
          Length = 383

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 453 SFVTTRTSVLNNRNNTIEITIARFNYSN 370
           SF+ T   ++NN+NN I IT+   N S+
Sbjct: 345 SFIITIVIIINNKNNIITITVTNTNSSS 372


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3    NVYVISSNRTQTPASNKFRLXFKSARC-HVKHC*YSIHRWRRLCRQQYY 146
            NV  +S +       + F     S RC HV HC +S    R LC+  YY
Sbjct: 1088 NVIAVSGSEQYIRVGD-FETVSYSRRCSHVNHCAHSFLMRRFLCQTWYY 1135


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 15  ISSNRTQTPASNKFRLXFKSARCHVKHC*YSIHRWRRLCRQQY 143
           + S+ T  P S   R     ++   +HC   I   +R+CR  Y
Sbjct: 803 VHSSSTGQPGSGLVRQSMAQSKIDKRHCTSQIRNSKRVCRASY 845


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 420 NRNNTIEITIARFNYSNRYFISLLNRS*KSFVHNIIS 310
           ++ NT+E+  A F+   ++F  L     KSFV N+IS
Sbjct: 205 DKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMIS 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,976
Number of Sequences: 59808
Number of extensions: 290473
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)