Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K04
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate...    30   1.9  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AB291062-1|BAF73936.1|  157|Caenorhabditis elegans dihydrofolate
           reductase protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  FGSXLNQLVVMSSIVDTVFTDGGAYVGNSIIFVKNLSYLSIV 180
           F S  N L  +S + D V+  GG  + NS+I   ++ +LS V
Sbjct: 77  FPSIENALKELSKVTDHVYVSGGGQIYNSLIEKADIIHLSTV 118


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 111 HRWRRLCRQQYYFC*KSFLFI 173
           HR  ++C   +YFC ++FLFI
Sbjct: 43  HRPNKVCTFSHYFCTRTFLFI 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,381
Number of Sequences: 27780
Number of extensions: 243704
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)