Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K04
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containi...    31   0.78 
At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containi...    31   0.78 
At1g43680.1 68414.m05018 hypothetical protein                          29   3.1  
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    27   9.6  

>At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 278 NIVLGTIIKFKKIQLIIMLNELFVWYRY 195
           ++VLGT+++FK+++   +++E+  W RY
Sbjct: 111 DLVLGTLVRFKQLKKWNLVSEILEWLRY 138


>At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 583

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 278 NIVLGTIIKFKKIQLIIMLNELFVWYRY 195
           ++VLGT+++FK+++   +++E+  W RY
Sbjct: 104 DLVLGTLVRFKQLKKWNLVSEILEWLRY 131


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 201 QVHNFILNDR*IRKIFNKNNTVAYISAAIGE 109
           QVH  IL+DR I   +    T+ +I++ +GE
Sbjct: 64  QVHGHILDDRGIHSPYVSERTIEFIASTLGE 94


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  IAHKHQLPTNFGSXLNQLVVMSSI 96
           IAH   LP N+G   NQ  + SSI
Sbjct: 594 IAHPQTLPVNYGGNTNQRPIPSSI 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,697
Number of Sequences: 28952
Number of extensions: 201547
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)