Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K03
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical...    28   7.5  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 527 LKHSFHQIEFYARFRFIFYDRKVTQQIRMTHVAAARVAMLVHKPFIFCSV 676
           L+ +   +  +A     +Y  K+    +++ V   R  ++VH P IFC++
Sbjct: 97  LRDASSMVALFAIVHVFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


>AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical
           protein Y87G2A.16 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 5/28 (17%)
 Frame = +1

Query: 37  FNNFTFI-----HNKNVKKKLFNIFKKH 105
           F+NFTFI     HN ++  +LF IF++H
Sbjct: 265 FSNFTFILYSSSHNFSITSQLFPIFRQH 292


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 355  IQIVPPKTQLLSIKTTNNRYSL*FRIGSMVKC 260
            + ++P K Q   ++ +N  Y   ++IG +VKC
Sbjct: 1082 LTMIPSKIQAGKVRASNLSYKSNYKIGDVVKC 1113


>AF068713-18|AAC17791.2|   96|Caenorhabditis elegans Hypothetical
           protein T24A6.1 protein.
          Length = 96

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 410 QFVFIFIAFNKHN*SIF 360
           +F+F F  FNKHN S+F
Sbjct: 64  KFIFSFFMFNKHNFSLF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,895
Number of Sequences: 27780
Number of extensions: 295940
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)