Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K03
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit...    98   6e-21
At3g23325.1 68416.m02942 splicing factor, putative similar to Sp...    97   1e-20
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    29   4.0  
At1g70560.1 68414.m08123 alliinase C-terminal domain-containing ...    27   9.2  

>At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit,
           putative similar to Splicing factor 3B subunit 10
           (SF3b10) (Pre-mRNA splicing factor SF3b 10 kDa subunit)
           (Swiss-Prot:Q9BWJ5) [Homo sapiens]; Conserved in
           Plasmodium, yeast, fly, mouse, human
          Length = 87

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 40/71 (56%), Positives = 54/71 (76%)
 Frame = -3

Query: 706 QSXYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFNLMERMLQ 527
           Q+ Y+GTGHAD +++EW +N  RDS  SY+GH  +LSYFAI ENES  R ++N M++ML 
Sbjct: 17  QAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLL 76

Query: 526 PCGPPPEKPED 494
           PCG PPE+ E+
Sbjct: 77  PCGLPPEREEE 87


>At3g23325.1 68416.m02942 splicing factor, putative similar to
           Splicing factor 3B subunit 10 (SF3b10) (Pre-mRNA
           splicing factor SF3b 10 kDa subunit) (Swiss-Prot:Q9BWJ5)
           [Homo sapiens]
          Length = 87

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 39/71 (54%), Positives = 54/71 (76%)
 Frame = -3

Query: 706 QSXYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFNLMERMLQ 527
           Q+ Y+GTGHAD +++EW +N  RDS  SY+GH  +LSYFAI ENES  R ++N M++ML 
Sbjct: 17  QAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLL 76

Query: 526 PCGPPPEKPED 494
           PCG PPE+ ++
Sbjct: 77  PCGLPPEREDE 87


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
          profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1  FSPFGGSR*CKLFNNFTFIHNKNV 72
          F+PFG S   +L+ +F F+H  NV
Sbjct: 20 FTPFGASSTTRLYLSFLFLHTANV 43


>At1g70560.1 68414.m08123 alliinase C-terminal domain-containing
           protein contains Pfam profiles: PF04864 allinase
           C-terminal domain, PF04863 alliinase EGF-like domain
          Length = 391

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 694 IGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVEN 575
           +   H D T YE    +  D C   +   DL+SYF+ + N
Sbjct: 25  VNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTN 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,757
Number of Sequences: 28952
Number of extensions: 253139
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)