Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K01
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039) 30 0.73
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 29 1.3
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 27 5.1
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 27 6.8
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 27 8.9
SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21) 27 8.9
>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
Length = 751
Score = 30.3 bits (65), Expect = 0.73
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 275 FVARNRNILHGLVLRLRSYKY*SLKRYVQRVTFIIG-GRLIFWFRYFVLVAMGR 117
F NR ++ L + + + Y QR+T + G +IF+F Y V+V +GR
Sbjct: 587 FHLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGFIIFYFAYVVVVIVGR 640
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 48 SIEEWCYIIHNLNYTLH*YHT*IPTHSNKNKIPK 149
+I E+ +I+H LNY LH T I + S KI K
Sbjct: 424 AIGEFAFILHLLNYKLHLMRTAIFSSSKNEKIVK 457
>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 237 SSFTKLQVLK---PQEICSKSYFYHWWPPY 157
+SF +QVLK + IC+ + FYH W Y
Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKY 378
>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 755
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 201 EICSKSYF-YHWWPPYFLVSVFCSC 130
E+CS Y+ Y+ PPY +C+C
Sbjct: 610 EMCSGGYYVYYLRPPYVCSMAYCAC 634
>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 303 FIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRN-QFI 437
F+G Y ++ I R+ + + + K KTR TQR RN Q+I
Sbjct: 47 FVGSTYVVVGKI-RVAVLGCIASPELIYKEKKTRLTQRIFRNGQYI 91
>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 219 VTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRIID--SISRLIFMAIL 365
++S K KN+ I N + GK F G+VY + D +I+ +F+ ++
Sbjct: 235 ISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVYSLKDQCTIAEQVFVILM 285
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 120 THSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKT 296
T K IP P + T + + ++ + TS N+ K IP++++ R KT
Sbjct: 196 TEEEKGPIPVPPSNRPTMSPATTNQLATQGDNFTTSPLANRPTKMTNIPTDQEERINKT 254
>SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 231 FTKLQVLKPQEICSKSYFYHWWPPYFLVSV-FCSCCYG*GFMCDI 100
F + + P+ C Y WWP Y V + F C + GF+ I
Sbjct: 154 FAESLTILPRGSCQNDYA--WWPNYTTVQLTFVLCAFTPGFVIPI 196
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 234 KNQAVKNIPIPSNKKVRCGKTAGFIGDVY 320
+ Q N P P+ KKV G A + DVY
Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368
>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 365
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 186 SYFYHWWP--PYFLVSVFCSCCY 124
++F+ W P + LVS+FC+ CY
Sbjct: 262 TFFFCWMPFTSFSLVSMFCTKCY 284
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 26.6 bits (56), Expect = 8.9
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 51 IEEWCYIIHNLNYTLH*YHT*IPTHSNKNK-IPKPENKAATNDKSNSLNISLEALVLVTS 227
IE I LN T+H H P+H+ +N E D+ N S A+ +
Sbjct: 33 IENLICIRAELNQTIHRKHVNAPSHATQNSHYSSHEKYIKFFDRKIRDNNSHRAVFTLIG 92
Query: 228 *TKNQAVKNIPIPSNKKVRCGKTA 299
T+ +A N+ S + G+TA
Sbjct: 93 RTETRAFGNMAFISAQLSPLGRTA 116
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 36 QYQSSIEEWCYIIHNLNYTLH*YHT*IP--THSNKNKIPKPENKAATNDKSNSLNISL 203
+Y + E+WC ++ +NY T P S K + E++ A + +L +SL
Sbjct: 938 RYDNEEEQWCEVVIKVNYECFLNPTITPCLVPSVKVESTSDEHRRAASQAGENLRVSL 995
>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
Length = 259
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 210 KPQEICSKSYFYHWWPPYFLVSVFCSCCYG*GFMCDINVRYNL 82
+P I + YF H WP ++++ C G +C ++V ++
Sbjct: 134 EPYSIYTYRYFIHNWPNLCFLAMYKDQCVG-AIVCKLDVHKSM 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,177
Number of Sequences: 59808
Number of extensions: 227696
Number of successful extensions: 512
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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