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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K01
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)                30   0.73 
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   1.3  
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                27   5.1  
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    27   6.8  
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.9  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              27   8.9  
SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        27   8.9  

>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
          Length = 751

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 275 FVARNRNILHGLVLRLRSYKY*SLKRYVQRVTFIIG-GRLIFWFRYFVLVAMGR 117
           F   NR     ++  L +  +  +  Y QR+T +   G +IF+F Y V+V +GR
Sbjct: 587 FHLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGFIIFYFAYVVVVIVGR 640


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 48  SIEEWCYIIHNLNYTLH*YHT*IPTHSNKNKIPK 149
           +I E+ +I+H LNY LH   T I + S   KI K
Sbjct: 424 AIGEFAFILHLLNYKLHLMRTAIFSSSKNEKIVK 457


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 237 SSFTKLQVLK---PQEICSKSYFYHWWPPY 157
           +SF  +QVLK    + IC+ + FYH W  Y
Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKY 378


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 201 EICSKSYF-YHWWPPYFLVSVFCSC 130
           E+CS  Y+ Y+  PPY     +C+C
Sbjct: 610 EMCSGGYYVYYLRPPYVCSMAYCAC 634


>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 303 FIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRN-QFI 437
           F+G  Y ++  I R+  +  +    +  K  KTR TQR  RN Q+I
Sbjct: 47  FVGSTYVVVGKI-RVAVLGCIASPELIYKEKKTRLTQRIFRNGQYI 91


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 219 VTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRIID--SISRLIFMAIL 365
           ++S  K    KN+ I  N   + GK   F G+VY + D  +I+  +F+ ++
Sbjct: 235 ISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVYSLKDQCTIAEQVFVILM 285


>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 120 THSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKT 296
           T   K  IP P +   T   + +  ++ +     TS   N+  K   IP++++ R  KT
Sbjct: 196 TEEEKGPIPVPPSNRPTMSPATTNQLATQGDNFTTSPLANRPTKMTNIPTDQEERINKT 254


>SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 231 FTKLQVLKPQEICSKSYFYHWWPPYFLVSV-FCSCCYG*GFMCDI 100
           F +   + P+  C   Y   WWP Y  V + F  C +  GF+  I
Sbjct: 154 FAESLTILPRGSCQNDYA--WWPNYTTVQLTFVLCAFTPGFVIPI 196


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 234 KNQAVKNIPIPSNKKVRCGKTAGFIGDVY 320
           + Q   N P P+ KKV  G  A  + DVY
Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368


>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 365

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 186 SYFYHWWP--PYFLVSVFCSCCY 124
           ++F+ W P   + LVS+FC+ CY
Sbjct: 262 TFFFCWMPFTSFSLVSMFCTKCY 284


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +3

Query: 51  IEEWCYIIHNLNYTLH*YHT*IPTHSNKNK-IPKPENKAATNDKSNSLNISLEALVLVTS 227
           IE    I   LN T+H  H   P+H+ +N      E      D+    N S  A+  +  
Sbjct: 33  IENLICIRAELNQTIHRKHVNAPSHATQNSHYSSHEKYIKFFDRKIRDNNSHRAVFTLIG 92

Query: 228 *TKNQAVKNIPIPSNKKVRCGKTA 299
            T+ +A  N+   S +    G+TA
Sbjct: 93  RTETRAFGNMAFISAQLSPLGRTA 116


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 36   QYQSSIEEWCYIIHNLNYTLH*YHT*IP--THSNKNKIPKPENKAATNDKSNSLNISL 203
            +Y +  E+WC ++  +NY      T  P    S K +    E++ A +    +L +SL
Sbjct: 938  RYDNEEEQWCEVVIKVNYECFLNPTITPCLVPSVKVESTSDEHRRAASQAGENLRVSL 995


>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 210 KPQEICSKSYFYHWWPPYFLVSVFCSCCYG*GFMCDINVRYNL 82
           +P  I +  YF H WP    ++++   C G   +C ++V  ++
Sbjct: 134 EPYSIYTYRYFIHNWPNLCFLAMYKDQCVG-AIVCKLDVHKSM 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,177
Number of Sequences: 59808
Number of extensions: 227696
Number of successful extensions: 512
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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