BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_K01 (439 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039) 30 0.73 SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 29 1.3 SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9 SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 27 5.1 SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1 SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8 SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8 SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8 SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 27 6.8 SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.9 SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 27 8.9 SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21) 27 8.9 >SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039) Length = 751 Score = 30.3 bits (65), Expect = 0.73 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 275 FVARNRNILHGLVLRLRSYKY*SLKRYVQRVTFIIG-GRLIFWFRYFVLVAMGR 117 F NR ++ L + + + Y QR+T + G +IF+F Y V+V +GR Sbjct: 587 FHLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGFIIFYFAYVVVVIVGR 640 >SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) Length = 829 Score = 29.5 bits (63), Expect = 1.3 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 48 SIEEWCYIIHNLNYTLH*YHT*IPTHSNKNKIPK 149 +I E+ +I+H LNY LH T I + S KI K Sbjct: 424 AIGEFAFILHLLNYKLHLMRTAIFSSSKNEKIVK 457 >SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 505 Score = 28.3 bits (60), Expect = 2.9 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -2 Query: 237 SSFTKLQVLK---PQEICSKSYFYHWWPPY 157 +SF +QVLK + IC+ + FYH W Y Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKY 378 >SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) Length = 755 Score = 27.5 bits (58), Expect = 5.1 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -2 Query: 201 EICSKSYF-YHWWPPYFLVSVFCSC 130 E+CS Y+ Y+ PPY +C+C Sbjct: 610 EMCSGGYYVYYLRPPYVCSMAYCAC 634 >SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 285 Score = 27.5 bits (58), Expect = 5.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 303 FIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRN-QFI 437 F+G Y ++ I R+ + + + K KTR TQR RN Q+I Sbjct: 47 FVGSTYVVVGKI-RVAVLGCIASPELIYKEKKTRLTQRIFRNGQYI 91 >SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 742 Score = 27.1 bits (57), Expect = 6.8 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 219 VTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRIID--SISRLIFMAIL 365 ++S K KN+ I N + GK F G+VY + D +I+ +F+ ++ Sbjct: 235 ISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVYSLKDQCTIAEQVFVILM 285 >SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 549 Score = 27.1 bits (57), Expect = 6.8 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +3 Query: 120 THSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKT 296 T K IP P + T + + ++ + TS N+ K IP++++ R KT Sbjct: 196 TEEEKGPIPVPPSNRPTMSPATTNQLATQGDNFTTSPLANRPTKMTNIPTDQEERINKT 254 >SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 339 Score = 27.1 bits (57), Expect = 6.8 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = -2 Query: 231 FTKLQVLKPQEICSKSYFYHWWPPYFLVSV-FCSCCYG*GFMCDI 100 F + + P+ C Y WWP Y V + F C + GF+ I Sbjct: 154 FAESLTILPRGSCQNDYA--WWPNYTTVQLTFVLCAFTPGFVIPI 196 >SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) Length = 486 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 234 KNQAVKNIPIPSNKKVRCGKTAGFIGDVY 320 + Q N P P+ KKV G A + DVY Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368 >SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 365 Score = 26.6 bits (56), Expect = 8.9 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -2 Query: 186 SYFYHWWP--PYFLVSVFCSCCY 124 ++F+ W P + LVS+FC+ CY Sbjct: 262 TFFFCWMPFTSFSLVSMFCTKCY 284 >SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3934 Score = 26.6 bits (56), Expect = 8.9 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Frame = +3 Query: 51 IEEWCYIIHNLNYTLH*YHT*IPTHSNKNK-IPKPENKAATNDKSNSLNISLEALVLVTS 227 IE I LN T+H H P+H+ +N E D+ N S A+ + Sbjct: 33 IENLICIRAELNQTIHRKHVNAPSHATQNSHYSSHEKYIKFFDRKIRDNNSHRAVFTLIG 92 Query: 228 *TKNQAVKNIPIPSNKKVRCGKTA 299 T+ +A N+ S + G+TA Sbjct: 93 RTETRAFGNMAFISAQLSPLGRTA 116 >SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) Length = 1452 Score = 26.6 bits (56), Expect = 8.9 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +3 Query: 36 QYQSSIEEWCYIIHNLNYTLH*YHT*IP--THSNKNKIPKPENKAATNDKSNSLNISL 203 +Y + E+WC ++ +NY T P S K + E++ A + +L +SL Sbjct: 938 RYDNEEEQWCEVVIKVNYECFLNPTITPCLVPSVKVESTSDEHRRAASQAGENLRVSL 995 >SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21) Length = 259 Score = 26.6 bits (56), Expect = 8.9 Identities = 11/43 (25%), Positives = 22/43 (51%) Frame = -2 Query: 210 KPQEICSKSYFYHWWPPYFLVSVFCSCCYG*GFMCDINVRYNL 82 +P I + YF H WP ++++ C G +C ++V ++ Sbjct: 134 EPYSIYTYRYFIHNWPNLCFLAMYKDQCVG-AIVCKLDVHKSM 175 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,111,177 Number of Sequences: 59808 Number of extensions: 227696 Number of successful extensions: 512 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 491 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 512 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 847047381 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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