Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_J24
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 68 6e-12
03_01_0034 + 318432-318825,318902-319851 68 6e-12
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 68 6e-12
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 68 6e-12
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 67 1e-11
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 67 1e-11
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 67 1e-11
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 64 7e-11
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 36 0.028
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 36 0.028
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 36 0.028
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 36 0.028
02_05_1127 + 34292894-34293284,34293948-34295443 29 2.4
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 3.2
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 4.2
09_03_0006 + 11426346-11426420,11426733-11427452 27 9.8
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 27 9.8
02_04_0470 - 23183925-23184743,23184929-23185153 27 9.8
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 577 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 605
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 418 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 446
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQY 561
WYT EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 413 WYTSEGMDEMEFTEAESNMNDLVAEYQQY 441
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 564
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEE 434
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 564
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 564
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 647 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 564
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 488 WYVGEGMEEGEFSEAREDLAALEKDYEE 515
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 524 RQTLRPRRRWPPGTVGTRRQG 586
R T +P+RRWPPG+ G +G
Sbjct: 83 RATGQPKRRWPPGSSGGGARG 103
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 506 SPAPAPRQTLRPRRRWPP 559
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 503 RSPAPAPRQTLRPRRRWPPGTVGT 574
R+PAP PR+ +R R R P V T
Sbjct: 31 RAPAPPPREVVRVRLRLTPAPVAT 54
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 476 RLVKGLSCPRSPAPAPRQ--TLRPRRRWPPGT 565
RL G CP S AP+P Q LR RR PP T
Sbjct: 110 RLAVGHRCPDSSAPSPPQPGALRWHRR-PPST 140
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = +2
Query: 440 GGKGGYLI*RRERLVKGLSCPRSPAPAPRQTLRPRRRWPPGTVGTRR 580
GG G L R +L +G PR A A R + RR PPG GTRR
Sbjct: 1438 GGGAGLLRQPRRQLAEGT--PRGTARA-RVSPPTYRRPPPGPHGTRR 1481
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 500 PRSPAPAPRQTLRPRRRWPP 559
PR P P P+ RP RR PP
Sbjct: 261 PRPPPPPPKARRRPCRRRPP 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,302
Number of Sequences: 37544
Number of extensions: 246731
Number of successful extensions: 801
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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