Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J23
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   9.8  
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    25   9.8  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   9.8  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 140 GNNLILTL*VGS-YR*YMCHKLK--FVAP*LDKTILCKQLFK 256
           G + ++T  VG+ ++ Y C KL   FV   LDK I C + FK
Sbjct: 45  GTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCLKSFK 86


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 426 CDGRRESGDICEARTDQNSDIVENVHLGVLSEQCIIGR 539
           C  RR+SG++C+   D+ +  V   H+ +  ++ +  R
Sbjct: 299 CSSRRKSGELCKHWLDKRAGDVCEYHVDLAVQRSMSTR 336


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 444 SGDICEARTDQNSDIVENVHLGVLSEQCIIGRPNS 548
           SG+IC          V NV   +LS Q ++G PN+
Sbjct: 109 SGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNN 143


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 149 LILTL*VGSYR*YMCHKLKFVAP 217
           L+L L V SY  Y+C +++FV P
Sbjct: 6   LMLVLLVCSYIHYVCAQIRFVTP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,987
Number of Sequences: 5004
Number of extensions: 28628
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)