Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J23
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979...    29   1.9  
07_03_0417 - 17970032-17970132,17970290-17970635                       28   4.3  
06_03_0743 + 24069752-24070483,24071890-24072345                       27   10.0 

>06_03_0458 -
           20995834-20996004,20996404-20997309,20997778-20997942,
           20998024-20998353,20998471-20998527,20998579-20998692,
           20999220-20999381,20999465-20999527,21001100-21001207,
           21001598-21001675,21001771-21001902
          Length = 761

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 GRRESGDICEARTDQNSDIVENVHLG 509
           G  +SG++ E   D  S +VENVH G
Sbjct: 666 GGNKSGELLERAEDMGSALVENVHFG 691


>07_03_0417 - 17970032-17970132,17970290-17970635
          Length = 148

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 401 RRVGGLQ---LLRWPK-GERRHMRGTHRSKQ*YSRKCSSWSAVGTVYHR 535
           RR G  Q   L +W + G+RRH RG  R    ++RKC + +  G V  R
Sbjct: 62  RRAGQRQSSWLRQWQRRGQRRHCRGRER----HARKCGAAAEAGVVCAR 106


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 402 GGLEVFSSCDGRRESGDICEARTDQNSDIVENVHLGVLS 518
           GG    S+ D +RES     A  DQ +++   +H+G+ S
Sbjct: 102 GGAASCSNNDDKRESPSAAAAADDQAAEVTVALHIGLPS 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,348,316
Number of Sequences: 37544
Number of extensions: 175886
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)