Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J22
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.53 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   0.92 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.5  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 295 PKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPEAV*AT 179
           P LS+Y  + +V       S++    HH+ + P AV  T
Sbjct: 193 PALSKYLDIINVMAYDLRGSWDGVTGHHSGLYPSAVDTT 231


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 46  KGTNMKCVKYLLCD*RVYSITC 111
           K  N KCVKYL+ D      TC
Sbjct: 47  KCENQKCVKYLVEDEETSLATC 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 246  PTCPMRAVPSTTTTSCQKQCEPH 178
            P  P  A+ STTT S   + +PH
Sbjct: 1397 PHAPQIALTSTTTNSLTFKLKPH 1419


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 328 QLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPEAV*ATRTKFNF 161
           Q+ E +T       SRYA L+   +   +  +ES  ++H  I+ E V    + F +
Sbjct: 319 QIIELMTSVVKSLESRYADLNENFLQCQDEKFESFVYYH-RILGETVDLFNSLFGY 373


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 328 QLSEDLTGPATPKLSRYAP 272
           +L + +T  ATP +  YAP
Sbjct: 274 RLRKQITSAATPLVRSYAP 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,217
Number of Sequences: 336
Number of extensions: 2409
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)