Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J22
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore n...    28   3.4  
AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    27   6.0  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 273 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 181
           ++ A ++    CP+ A PST T+SC   C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 273 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 181
           ++ A ++    CP+ A PST T+SC   C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 273 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 181
           ++ A ++    CP+ A PST T+SC   C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 273 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 181
           ++ A ++    CP+ A PST T+SC   C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521


>AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore null
           protein 3 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 333 TSSCPKTSQVRPLQN*ADMLHFTASLSMHPTCPMRAVPSTTTTSCQKQCEP 181
           T  CP+T  V   ++  D+       ++ P+ P RA P+   T C+K   P
Sbjct: 80  TQGCPETFSVSEHEDDDDVEPMEVDGTIVPS-PQRATPTRGVTPCEKSTTP 129


>AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical
           protein Y46D2A.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 306 VRPLQN*ADMLHFTASLSMHPTCPMRAVPSTT-TTSCQKQCEPHVQNLIFKSYIMKLTTE 130
           + PLQ   D  +FTAS  M  T   + V     TT+        V + +F+ +++K   +
Sbjct: 154 IEPLQIGLDYWYFTASEPMSMTMESKYVSDLVYTTTSVNTTGLVVNDFLFQEHVVKFQLD 213

Query: 129 LTLFQATSDRIYAL 88
           LT  +     + A+
Sbjct: 214 LTRVRTIGTLVSAI 227


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
 Frame = -3

Query: 399 TTVPLLQR*VNPAAPKRT------AAWYTSSCPKTSQVRPLQN*ADMLHFTASLSMHPTC 238
           TTVP+ +  V    P  T      A  YT S P T+                 +S     
Sbjct: 610 TTVPITKTCVPQCQPACTQECVQQATTYTISIPMTTAAPSCAPQCQPACDPQCISFTLKL 669

Query: 237 PMRAVPSTTTTSCQKQCEPHVQNLIFKSY 151
           P+   P  T  SCQ QC+P  Q    ++Y
Sbjct: 670 PVMTTPPPTP-SCQPQCQPACQPSCMETY 697


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 367 PGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNN 206
           P    +D  L+ Q+ S D +      LS++AP    +    + S   SPF H N
Sbjct: 62  PDAASQDYQLIGQESSSDHSVSLATPLSKHAPDRRSSFLKRSASGHESPFSHPN 115


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 172 LYVWLTLLLARCCCGGRDCSHRTC 243
           LY ++T+L A CCC G+D + +TC
Sbjct: 547 LYFFMTILCA-CCCKGKDHA-KTC 568


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 262 VTVNASNMSYESSPFHH 212
           VT+ AS M +E+ P+HH
Sbjct: 646 VTIGASGMMFEAGPWHH 662


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -1

Query: 413 QAAQIQQCHYCSDESTRPHQKGLRLGIPAVVRRPHRSGHSKTKPICSTSQRHCQCIQHVL 234
           Q   +QQC+    E T+P Q   +   P  V++        + P C   Q  CQ    V 
Sbjct: 217 QQVPVQQCY---QECTQPCQTTCQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVC 273

Query: 233 *EQSLP 216
            +Q  P
Sbjct: 274 QQQCAP 279


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -1

Query: 413 QAAQIQQCHYCSDESTRPHQKGLRLGIPAVVRRPHRSGHSKTKPICSTSQRHCQCIQHVL 234
           Q   +QQC+    E T+P Q   +   P  V++        + P C   Q  CQ    V 
Sbjct: 218 QQVPVQQCY---QECTQPCQTTCQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVC 274

Query: 233 *EQSLP 216
            +Q  P
Sbjct: 275 QQQCAP 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,948
Number of Sequences: 27780
Number of extensions: 229445
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)