Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J22
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    29   1.9  
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim...    29   1.9  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    29   1.9  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    29   2.5  
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   5.7  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   5.7  

>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 267 TASLSMHPTCPMRAVP 220
           T +LSMHP C MR VP
Sbjct: 202 TCNLSMHPVCAMRKVP 217


>At3g09270.1 68416.m01101 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA71784 [Glycine
           max]
          Length = 224

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 343 GLVYQQLSEDLTGPATPKLSRYAPLH 266
           G+ Y+ + ED+ G  +P L +Y P+H
Sbjct: 29  GIPYEYIEEDVYGNRSPMLLKYNPIH 54


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 267 TASLSMHPTCPMRAVP 220
           T +LSMHP C MR VP
Sbjct: 66  TCNLSMHPVCAMRPVP 81


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 282 DMLHFTAS--LSMHPTCPMRAVPS 217
           DM++ +++  LSMHP C M+ VPS
Sbjct: 175 DMIYHSSTYKLSMHPVCAMKPVPS 198


>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 167

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 208 CCGGRDCSHRTC 243
           CCGG D +HRTC
Sbjct: 119 CCGGDDDNHRTC 130


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 WHDVVVVEGTALIGHVGCIDSDAV 268
           WH    ++GT LI   GC DS A+
Sbjct: 400 WHSSCTLDGTKLIVSGGCADSGAL 423


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 WHDVVVVEGTALIGHVGCIDSDAV 268
           WH    ++GT LI   GC DS A+
Sbjct: 390 WHSSCTLDGTKLIVSGGCADSGAL 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,269
Number of Sequences: 28952
Number of extensions: 204605
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)