Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J18
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   118   1e-27
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    26   6.3  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  118 bits (283), Expect = 1e-27
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
 Frame = -1

Query: 502 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSD 323
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 322 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPS 158
           F       + FDSY++P  +++    R L+VD              +T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 157 LGVKXDANPGRLNQTNCXXXRPGIFFGQCAEICGAKQSLRPIGIESISIKTY 2
           LG+K D  P RLNQ +    R G+F+GQC+E+CG   S  PI ++ +S++ +
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDF 240


>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 580 CDREKKIICSIKGEAPFCRFKFDHVAIIGRPNSFKFPIVSR 702
           C R + + C +   A    F  +H+  I R N+ + P VS+
Sbjct: 71  CQRARNVDCVLIFNAKTKTFTLEHIDEIARLNALRNPKVSK 111


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 216 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 329
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,888
Number of Sequences: 5004
Number of extensions: 33247
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)