Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J15
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               80   2e-15
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.94 
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         29   5.0  
SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15)           28   8.8  
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 46/114 (40%), Positives = 59/114 (51%)
 Frame = -2

Query: 342 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF 163
           PF  N  PLRRIPQ YVI TST I + + KLP+H     F             K  +D+F
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH----AFADESYFKGEPKKKKRSEDMF 57

Query: 162 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAAFGLRSSQXPH 1
               E+  PSEQR  DQK VD+ ++  I A P+   ++  L + F LR  Q PH
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPH 108


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -3

Query: 248  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 69
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 68   PTRRCSAXTSKRPSDSA 18
             +RR     S   S +A
Sbjct: 1023 SSRRTYRAASMDASTTA 1039


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 451 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 305
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 148 EIRSI*AAQNRSEDSRRGCDQSHRSPTRQEGAPRXPQSGLRTPL 17
           E++     Q + +   +G ++ H     QEG  + PQ G +TP+
Sbjct: 657 EVQGQEQGQGQDQSHVQGQEEGHSQDQGQEGTNQVPQQGEKTPI 700


>SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15)
          Length = 355

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 113 RRQSTRL*SKPSEPDPTRRCSAXTSKRPSDSAR 15
           R ++T L +   +PD    CS+  SK+PSD  R
Sbjct: 177 RNRTTDLGAPVQKPDAISGCSSTLSKKPSDFDR 209


>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 113 RRQSTRL*SKPSEPDPTRRCSAXTSKRPSDSAR 15
           R ++T L +   +PD    CS+  SK+PSD  R
Sbjct: 340 RNRTTDLGAPVQKPDAISGCSSTLSKKPSDFDR 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,761,500
Number of Sequences: 59808
Number of extensions: 475459
Number of successful extensions: 1551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)