BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_J15 (721 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 132 3e-31 U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 30 1.4 U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 30 1.4 U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 30 1.4 U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 30 1.4 AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 30 1.4 Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 29 3.3 Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 5.8 >U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein, large subunitprotein 6 protein. Length = 217 Score = 132 bits (318), Expect = 3e-31 Identities = 74/153 (48%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Frame = -2 Query: 456 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 280 +R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126 Query: 279 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 100 ++++ K+P+H ND+YF K G +IFA+ K +Y SEQRK D KTVD Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180 Query: 99 EAVIKAIGARPDKKVLRGXLKAAFGLRSSQXPH 1 ++ AI P+ K L G L F L +Q PH Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPH 213 >U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein 1, isoform a protein. Length = 953 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = -3 Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111 PPP S TS NC ++ + + + SAS S R + S N + + + Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557 Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9 + +L S+ S + S+ P D + K Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 591 >U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein 1, isoform b protein. Length = 1028 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = -3 Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111 PPP S TS NC ++ + + + SAS S R + S N + + + Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632 Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9 + +L S+ S + S+ P D + K Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 666 >U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein 1, isoform c protein. Length = 962 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = -3 Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111 PPP S TS NC ++ + + + SAS S R + S N + + + Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566 Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9 + +L S+ S + S+ P D + K Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 600 >U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein 1, isoform d protein. Length = 1106 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = -3 Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111 PPP S TS NC ++ + + + SAS S R + S N + + + Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710 Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9 + +L S+ S + S+ P D + K Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 744 >AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin protein. Length = 953 Score = 30.3 bits (65), Expect = 1.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = -3 Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111 PPP S TS NC ++ + + + SAS S R + S N + + + Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557 Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9 + +L S+ S + S+ P D + K Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 591 >Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical protein C54C8.12 protein. Length = 82 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -2 Query: 525 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 391 FYPT+ A S G P + PN ++ V A RHAG R Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70 >Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical protein F31B12.2 protein. Length = 1089 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -3 Query: 212 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 78 RSA +V+ +V+ + + R + HLS+++PI +S S P+ Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,664,053 Number of Sequences: 27780 Number of extensions: 350663 Number of successful extensions: 985 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 983 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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