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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J15
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   132   3e-31
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    30   1.4  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    30   1.4  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    30   1.4  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    30   1.4  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    30   1.4  
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  132 bits (318), Expect = 3e-31
 Identities = 74/153 (48%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
 Frame = -2

Query: 456 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 280
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 279 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 100
            ++++   K+P+H ND+YF             K G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 99  EAVIKAIGARPDKKVLRGXLKAAFGLRSSQXPH 1
             ++ AI   P+ K L G L   F L  +Q PH
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPH 213


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -3

Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111
           PPP   S TS  NC ++ + +   +  SAS   S   R + S      N   + + +   
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557

Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9
             + +L S+ S  +     S+     P D  + K
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 591


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -3

Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111
           PPP   S TS  NC ++ + +   +  SAS   S   R + S      N   + + +   
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632

Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9
             + +L S+ S  +     S+     P D  + K
Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 666


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -3

Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111
           PPP   S TS  NC ++ + +   +  SAS   S   R + S      N   + + +   
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566

Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9
             + +L S+ S  +     S+     P D  + K
Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 600


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -3

Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111
           PPP   S TS  NC ++ + +   +  SAS   S   R + S      N   + + +   
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710

Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9
             + +L S+ S  +     S+     P D  + K
Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 744


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -3

Query: 284 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 111
           PPP   S TS  NC ++ + +   +  SAS   S   R + S      N   + + +   
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557

Query: 110 RQSTRL*SKPSEPDPTRRCSAXTSKRPSDSARAK 9
             + +L S+ S  +     S+     P D  + K
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTKQK 591


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 525 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 391
           FYPT+    A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 212 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 78
           RSA +V+    +V+  + +  R + HLS+++PI  +S    S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,053
Number of Sequences: 27780
Number of extensions: 350663
Number of successful extensions: 985
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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