Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J14
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +3

Query: 372 LLSLLYYYIKNNKYQVHTL 428
           +L++LY+  KN+KY+ +T+
Sbjct: 78  VLNVLYFINKNDKYEENTI 96


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 466 SGPSSRCDIVDVRFNNNNIMKMY 534
           S  S+ C+  +  +NNNN  K+Y
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKKLY 327


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 552 ICFLLGIHFHNIIVIETNIYYVT 484
           +  +LG+ FH +I + T  +++T
Sbjct: 317 VTVILGLLFHALITLPTIFWFLT 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,423
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)