Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_J12
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 27 1.9
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 3.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 5.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.7
SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 5.7
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 10.0
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 10.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 10.0
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 10.0
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = -2
Query: 410 DCIGKAVLIEINKNLTGESQFVYWNKIASHSLKDMLGIRSSQITWLHGLVNSARQTLRIH 231
D GKA I + S F+Y + D++G R + ++GL + Q LR
Sbjct: 229 DVTGKAQEKAIGLAVAVGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRER 288
Query: 230 GLNVAAQNRGTIGTFVQLL 174
G + A T+ Q L
Sbjct: 289 GHSPAEAFNETVEEATQSL 307
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 148 LLLQTHRHSITTSYFLIRAQKRTP 77
LLLQ +R S +SYF I+ ++ P
Sbjct: 610 LLLQKYRESCVSSYFFIKCVEQIP 633
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 286 WLERIPSISFKEWLAILFQ*TNWLSPVKFLLISINTAFPMQSHFVS 423
W+ER ++ ++E L +LF T + P L++ + A + +H S
Sbjct: 443 WIERSDTVMYREILKLLFPMTLQVVPPPVLVLLRHLAENLVNHISS 488
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 547 IVNSLSALTCAGHRHKKIPTKIIIELNFDASIVRDVIL 660
I+N + + H ++ +II + N ++IVRD +L
Sbjct: 798 IINQMKTIPSILRTHPEVLAQIISKSNDQSAIVRDTVL 835
>SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 270 WISEFGSSNFKDPRVECGRAKPRNH 196
WI EFG S FK P + + P ++
Sbjct: 6 WIGEFGPSKFKSPIDKLNQLLPESN 30
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = -2
Query: 569 KAESEFTIVTDDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV 390
KA+ + E+ TS I D PI LLG + + G+ V ++ + V
Sbjct: 245 KAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPSLLGKIRSSVNKGMTDVASQVNRGMTDV 304
Query: 389 LIEINKNLTGESQFVY--WNKIASHSLKDMLGIRS 291
++NK + G + V N +A+ K + G+ S
Sbjct: 305 ASQVNKGVNGVASQVNKGMNGVANQVNKGVTGVAS 339
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 400 PMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDVQVFSESS 540
P+ ++ +TP P+A +SP S G SL+ D+ S+ +
Sbjct: 5 PLDNNMPTTPVEEKIPVASYSPSSSGSSSGA---SLLVDIMCGSKET 48
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 545 VTDDSEKTCTSKISDCSTTPPIHD 474
+T+ S +T S+ S CSTT P+ D
Sbjct: 38 ITNKSLETLRSQESPCSTTFPVSD 61
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 309 YARNTFEPDHVATWISEFGSSNFKDPRVEC 220
+ + + + + S F SSN KDP +C
Sbjct: 50 FPTSCIDSSKIQNFFSSFHSSNEKDPNAQC 79
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 545 VTDDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDP 438
+T+DS +T + + S+ PI +++L +K G+P
Sbjct: 438 LTEDSIQTFSFESSNYIVAEPIQNVILKIKSNWGNP 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,205
Number of Sequences: 5004
Number of extensions: 60980
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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