Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_J12
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 34 0.12
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494... 30 1.9
05_01_0066 - 465526-466107,466541-466741 30 1.9
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 29 2.6
08_01_0262 + 2134038-2134610 29 4.5
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 29 4.5
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 28 5.9
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 28 5.9
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 5.9
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 7.8
02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759 28 7.8
>03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -2
Query: 311 DMLGIRSSQITWLHGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSA 144
D + R + W L AR L H L +A + RG IG L+TWN V+ G A
Sbjct: 911 DEMASRGDPVVWNALLACYARHGLPEHALALAVKMRG-IGLCPDLVTWNIVVSGFA 965
>12_02_0757 +
22845825-22846032,22848331-22848498,22848929-22849434,
22849890-22850151,22851708-22851942,22854240-22854496,
22854592-22854635
Length = 559
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Frame = -2
Query: 467 LGLKGAMGDP-----GLPGVDTKCDCIGK----AVLIEINKNLTGESQFVYWNKIASHSL 315
+G+KG DP G V CD + A N ++ YW +A S+
Sbjct: 231 VGIKGIAFDPDFINNGCYYVSLTCDSVSSSNCGAAAAAAGANGAQPQRYRYWLLVAMFSV 290
Query: 314 KDMLGI----RSSQITWLHGLVNSARQTLRIHGLNVAAQ 210
KD +G+ + ++ ++ + Q ++I+GLN Q
Sbjct: 291 KDSMGMTKTFKPKEMMTIYKIALPPPQEVKIYGLNQGGQ 329
>05_01_0066 - 465526-466107,466541-466741
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/98 (25%), Positives = 48/98 (48%)
Frame = -2
Query: 659 RITSRTMDASKFSSIIIFVGIFLCLCPAQVKAESEFTIVTDDSEKTCTSKISDCSTTPPI 480
+I S T++ S+ S + + +F C+ A ++ E I++D + KI+ C+T P
Sbjct: 122 KIVSETLE-SRLSEVEL---VFNCVKKA-LEGTVEIKILSD--AQVFHGKITACTTNVPN 174
Query: 479 HDLLLGLKGAMGDPGLPGVDTKCDCIGKAVLIEINKNL 366
H +LL +G G D + + V++ +N+ L
Sbjct: 175 HAVLLYDSDVVGCSTTVGDDRVIQLLRRVVVVSVNEML 212
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 395 LFLCNRILYPHQAILDHPLHLLAREANRVLVVSSNS 502
L L + + YPHQ I + LLA + N++L +S +S
Sbjct: 526 LMLQSILQYPHQYIRPYVASLLAMDDNKILQISKDS 561
>08_01_0262 + 2134038-2134610
Length = 190
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +1
Query: 382 SINTAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVE 498
S T P S P N G P+ P S SKS GGVVE
Sbjct: 136 SSTTPSPSPSPAALPPVNGGRPVTPSSSASKS--GGVVE 172
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 352 WLSPVKFLLISINTAFPMQSHFVSTPG 432
WL + FLL++IN +P+ F S G
Sbjct: 348 WLFVIVFLLLNINGGYPLNFSFASNAG 374
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 320 SLKDMLGIRSSQI--TWLHGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGS 147
+LK ++ +RS + LH + S R+ + LN+ + + + TW DV+ S
Sbjct: 443 NLKSLITLRSFDLGENSLHN-IRSIRELTNLKDLNLCYSGKNVVSN---METWIDVLRSS 498
Query: 146 ASTDSSPFYYNVVFPDSC 93
S+ Y ++ +P +C
Sbjct: 499 LEKLSNLKYLHLYWPGTC 516
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 232 TG*MWPRKTAEPSARSFNCSRGMTS*SVLLLQTHRHSITTSYFLIRAQKRTPLL 71
T M P + A P SFN + L H H+I +Y + AQ R +L
Sbjct: 297 TNQMVPMRCACPCGTSFNAKSNANGMLMSPLGCHVHAIARNYGALTAQNRMSIL 350
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 190 VPMVPRFCAATFNPW 234
+P VP FC FNPW
Sbjct: 93 LPQVPNFCGNGFNPW 107
>02_04_0480 - 23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 298 IPSISFKEWLAILFQ*TNWLSPVKFLLISINTAFP 402
IPS + ++WL + W+ V+F+LI++ P
Sbjct: 957 IPS-TIQKWLVFSYSVVQWMQFVEFMLIAVRAELP 990
>02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759
Length = 393
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 421 STPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDVQVFSESSVTIVNSLSALTCAGHRHKKI 600
S P PG P+A P + ++++ LIFD SVT ++
Sbjct: 295 SLPYTPGVPLASMYPHAHPLAIDLLQKMLIFDPT--KRISVTEALEHPYMSPLYDPSANP 352
Query: 601 PTKIIIELNFDASIVRDVI 657
P ++ I+L+ D +I D+I
Sbjct: 353 PAQVPIDLDIDENISADMI 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,702
Number of Sequences: 37544
Number of extensions: 393252
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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