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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J12
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protei...    30   1.7  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    30   1.7  
Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    29   2.3  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    29   2.3  
U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    29   4.0  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen prot...    28   5.3  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   7.0  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   7.0  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    28   7.0  
AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    28   7.0  
AF040659-9|AAK39391.1|  344|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    28   7.0  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
 Frame = +1

Query: 379 ISINTAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDV-------QVFSES 537
           ++++TA      +V T  NPG P  P+    +SC+      +++ ++       QV +ES
Sbjct: 368 VTVSTAQWPSDSYVPTECNPGGPSGPWDASGESCLDWYKANTILIEIYYERMNFQVLTES 427

Query: 538 -SVTIVNSLS 564
            + T VN +S
Sbjct: 428 PAYTFVNFIS 437


>Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical
           protein F15A2.1 protein.
          Length = 291

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 539 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV 390
           D+S+  C  +   C   PP      G +GA G PG PGVD K    GK++
Sbjct: 87  DNSQCHCGLQSQGCPDGPPG---ARGPQGAPGLPGAPGVDGKPGVDGKSL 133


>U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protein
           174 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 503 DCSTTPPIHDLLLGLKGAMGDPGLPGVD 420
           DC   PP      G+KG  G+PG PG D
Sbjct: 169 DCPPGPPGPAGSAGVKGPSGNPGAPGTD 196


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -2

Query: 536 DSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 426
           D   T      DC T PP      G KG  G+PG PG
Sbjct: 174 DESPTAADFCFDCPTGPPGPPGKQGPKGPNGEPGAPG 210


>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 266 LVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSASTDSSPFYY-NVVFPDSC 93
           ++      LR+H L V    R  I     LL+W D+I        +PF+   V+ P++C
Sbjct: 232 MLEKRHHKLRVHFLEVYFWKRPLIELAASLLSWCDLIDLKGIVLETPFFKGTVIEPEAC 290


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 467 LGLKGAMGDPGLPGVDTK-CDCIGKAVLIE 381
           +G  G  G+PG+PG D   C C  +  L+E
Sbjct: 260 MGTPGGPGEPGIPGSDAAYCPCPKREALVE 289


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 539 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 426
           DDS+    S   DC   PP      G KG  G PG PG
Sbjct: 195 DDSQAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAPG 232


>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 84  RFCARIRKYDVVIEWR*VCRSRTDYD 161
           +FC     Y+ + +WR +  SRT+YD
Sbjct: 124 QFCFNQSDYNTIYQWRAMVASRTEYD 149


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 464 GLKGAMGDPGLPGVDTK-CDCIGKAVLIEINKNL 366
           G+ G  G+PG PG D   C C  ++ ++ +N+ +
Sbjct: 250 GVPGTPGNPGAPGGDAAYCPCPARSSVMAVNRRV 283


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 464 GLKGAMGDPGLPGVDTK-CDCIGKAVLIE 381
           G+ G  G+PGLPG D   C C  +   +E
Sbjct: 256 GVVGIPGEPGLPGSDASYCQCPDRTPTVE 284


>AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen protein
           115 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 464 GLKGAMGDPGLPGVDTKCDCIGKAVL 387
           GL+G  G+PG PG    CD     VL
Sbjct: 351 GLQGRPGNPGAPGSPASCDHCAPPVL 376


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 464 GLKGAMGDPGLPGVDTKC 411
           GL+G  GD GLPG++ +C
Sbjct: 704 GLRGEHGDNGLPGLEGEC 721


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 464  GLKGAMGDPGLPGVDTKC 411
            GL+G  GD GLPG++ +C
Sbjct: 961  GLRGEHGDNGLPGLEGEC 978


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 464  GLKGAMGDPGLPGVDTKC 411
            GL+G  GD GLPG++ +C
Sbjct: 960  GLRGEHGDNGLPGLEGEC 977


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 668 YFIRITSRTMDASKFSSIIIFVGIFLCLCPAQVKAESEFTIVTDDSEKTCTSKIS 504
           +FI +T RTM  S  S I I +GI LC   A +       +  D+    CT  +S
Sbjct: 56  HFIILTRRTMMIS--SIISIMIGIALCDFVAMIATIVSSGMFFDEEGTDCTPPVS 108


>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 521 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVD 420
           C     +C   PP      G KG++G+PG PG D
Sbjct: 88  CAEPTKNCPAGPP------GEKGSLGNPGQPGPD 115


>AF040659-9|AAK39391.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK484.7 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 MQSHFVSTPGNPGSPIAPFSPRSKSC 480
           + ++FVSTP NP   I   +P  KSC
Sbjct: 107 IHANFVSTPSNPRRFICTQAPLDKSC 132


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 521 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGV 423
           C ++   C   PP      G  GA G+PGLPG+
Sbjct: 89  CGAQSQGCPAGPPGPP---GYPGAQGEPGLPGI 118


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -2

Query: 479 HDLLLGLKGAMGDPGLPGVDTK-CDC 405
           HD   G  G  G PG PG D   C C
Sbjct: 251 HDAFPGTPGQAGKPGAPGKDANYCPC 276


>U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK430.8 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = -2

Query: 545 VTDDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV---LIEIN 375
           ++ D  KT     ++C T  P+    + +     DP L     +C  + ++     +E  
Sbjct: 269 MSHDMSKTTLQPSANCKTCDPVPSKCMPIPIGEKDPNLGFKSKQCLKVSRSAPICRVEPR 328

Query: 374 KNLTGESQFVYWNKIASHSLKDMLGIRSSQITWL 273
           + L   + ++  + I   SLKD+   R  +  +L
Sbjct: 329 EQLNENTAYIDGSMIYGSSLKDLHKFRDGRTGFL 362


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 58  YSHGLAVEFVSVHESGNTTL**NGDESVEAE 150
           Y+HG  +++    E+G TT+  NG + +EAE
Sbjct: 105 YNHGPQIKYTEA-ENGGTTVKCNGQKRIEAE 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,180
Number of Sequences: 27780
Number of extensions: 356772
Number of successful extensions: 1964
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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