BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_J12 (675 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 31 0.75 Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 30 1.3 U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 30 1.7 AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.7 Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.3 U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 2.3 AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 2.3 U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical pr... 29 4.0 AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 4.0 Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 28 5.3 AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 28 5.3 Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 7.0 Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 7.0 X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 7.0 AF106575-14|AAC78163.2| 365|Caenorhabditis elegans Serpentine r... 28 7.0 AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 28 7.0 AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical ... 28 7.0 AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 7.0 Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.2 U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical pr... 27 9.2 AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical... 27 9.2 >Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical protein T28B8.5 protein. Length = 527 Score = 31.1 bits (67), Expect = 0.75 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Frame = +1 Query: 379 ISINTAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDV-------QVFSES 537 ++++TA +V T NPG P P+ +SC+ +++ ++ QV +ES Sbjct: 368 VTVSTAQWPSDSYVPTECNPGGPSGPWDASGESCLDWYKANTILIEIYYERMNFQVLTES 427 Query: 538 -SVTIVNSLS 564 + T VN +S Sbjct: 428 PAYTFVNFIS 437 >Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical protein F15A2.1 protein. Length = 291 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -2 Query: 539 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV 390 D+S+ C + C PP G +GA G PG PGVD K GK++ Sbjct: 87 DNSQCHCGLQSQGCPDGPPG---ARGPQGAPGLPGAPGVDGKPGVDGKSL 133 >U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein 174 protein. Length = 314 Score = 29.9 bits (64), Expect = 1.7 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -2 Query: 503 DCSTTPPIHDLLLGLKGAMGDPGLPGVD 420 DC PP G+KG G+PG PG D Sbjct: 169 DCPPGPPGPAGSAGVKGPSGNPGAPGTD 196 >AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein 68 protein. Length = 329 Score = 29.9 bits (64), Expect = 1.7 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -2 Query: 536 DSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 426 D T DC T PP G KG G+PG PG Sbjct: 174 DESPTAADFCFDCPTGPPGPPGKQGPKGPNGEPGAPG 210 >Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical protein K10G4.1 protein. Length = 802 Score = 29.5 bits (63), Expect = 2.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = -2 Query: 266 LVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSASTDSSPFYY-NVVFPDSC 93 ++ LR+H L V R I LL+W D+I +PF+ V+ P++C Sbjct: 232 MLEKRHHKLRVHFLEVYFWKRPLIELAASLLSWCDLIDLKGIVLETPFFKGTVIEPEAC 290 >U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein 111 protein. Length = 332 Score = 29.5 bits (63), Expect = 2.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -2 Query: 467 LGLKGAMGDPGLPGVDTK-CDCIGKAVLIE 381 +G G G+PG+PG D C C + L+E Sbjct: 260 MGTPGGPGEPGIPGSDAAYCPCPKREALVE 289 >AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical protein Y51H4A.9 protein. Length = 351 Score = 29.5 bits (63), Expect = 2.3 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = -2 Query: 539 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 426 DDS+ S DC PP G KG G PG PG Sbjct: 195 DDSQAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAPG 232 >U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical protein K07E3.2 protein. Length = 771 Score = 28.7 bits (61), Expect = 4.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 84 RFCARIRKYDVVIEWR*VCRSRTDYD 161 +FC Y+ + +WR + SRT+YD Sbjct: 124 QFCFNQSDYNTIYQWRAMVASRTEYD 149 >AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen protein 143 protein. Length = 319 Score = 28.7 bits (61), Expect = 4.0 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTK-CDCIGKAVLIEINKNL 366 G+ G G+PG PG D C C ++ ++ +N+ + Sbjct: 250 GVPGTPGNPGAPGGDAAYCPCPARSSVMAVNRRV 283 >Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical protein F22D6.10 protein. Length = 302 Score = 28.3 bits (60), Expect = 5.3 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTK-CDCIGKAVLIE 381 G+ G G+PGLPG D C C + +E Sbjct: 256 GVVGIPGEPGLPGSDASYCQCPDRTPTVE 284 >AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein 115 protein. Length = 393 Score = 28.3 bits (60), Expect = 5.3 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTKCDCIGKAVL 387 GL+G G+PG PG CD VL Sbjct: 351 GLQGRPGNPGAPGSPASCDHCAPPVL 376 >Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein K04H4.1b protein. Length = 1502 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTKC 411 GL+G GD GLPG++ +C Sbjct: 704 GLRGEHGDNGLPGLEGEC 721 >Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein K04H4.1a protein. Length = 1759 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTKC 411 GL+G GD GLPG++ +C Sbjct: 961 GLRGEHGDNGLPGLEGEC 978 >X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen protein. Length = 1758 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 Query: 464 GLKGAMGDPGLPGVDTKC 411 GL+G GD GLPG++ +C Sbjct: 960 GLRGEHGDNGLPGLEGEC 977 >AF106575-14|AAC78163.2| 365|Caenorhabditis elegans Serpentine receptor, class w protein98 protein. Length = 365 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -2 Query: 668 YFIRITSRTMDASKFSSIIIFVGIFLCLCPAQVKAESEFTIVTDDSEKTCTSKIS 504 +FI +T RTM S S I I +GI LC A + + D+ CT +S Sbjct: 56 HFIILTRRTMMIS--SIISIMIGIALCDFVAMIATIVSSGMFFDEEGTDCTPPVS 108 >AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein 49 protein. Length = 283 Score = 27.9 bits (59), Expect = 7.0 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 521 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVD 420 C +C PP G KG++G+PG PG D Sbjct: 88 CAEPTKNCPAGPP------GEKGSLGNPGQPGPD 115 >AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical protein ZK484.7 protein. Length = 344 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 403 MQSHFVSTPGNPGSPIAPFSPRSKSC 480 + ++FVSTP NP I +P KSC Sbjct: 107 IHANFVSTPSNPRRFICTQAPLDKSC 132 >AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein 141 protein. Length = 314 Score = 27.9 bits (59), Expect = 7.0 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 521 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGV 423 C ++ C PP G GA G+PGLPG+ Sbjct: 89 CGAQSQGCPAGPPGPP---GYPGAQGEPGLPGI 118 >Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical protein T10B10.1 protein. Length = 428 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%) Frame = -2 Query: 479 HDLLLGLKGAMGDPGLPGVDTK-CDC 405 HD G G G PG PG D C C Sbjct: 251 HDAFPGTPGQAGKPGAPGKDANYCPC 276 >U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical protein ZK430.8 protein. Length = 724 Score = 27.5 bits (58), Expect = 9.2 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Frame = -2 Query: 545 VTDDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV---LIEIN 375 ++ D KT ++C T P+ + + DP L +C + ++ +E Sbjct: 269 MSHDMSKTTLQPSANCKTCDPVPSKCMPIPIGEKDPNLGFKSKQCLKVSRSAPICRVEPR 328 Query: 374 KNLTGESQFVYWNKIASHSLKDMLGIRSSQITWL 273 + L + ++ + I SLKD+ R + +L Sbjct: 329 EQLNENTAYIDGSMIYGSSLKDLHKFRDGRTGFL 362 >AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical protein F31F4.15 protein. Length = 347 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 58 YSHGLAVEFVSVHESGNTTL**NGDESVEAE 150 Y+HG +++ E+G TT+ NG + +EAE Sbjct: 105 YNHGPQIKYTEA-ENGGTTVKCNGQKRIEAE 134 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,256,180 Number of Sequences: 27780 Number of extensions: 356772 Number of successful extensions: 1964 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1948 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1529108810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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