Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J08
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220...    29   2.5  
04_01_0176 + 2003707-2004130,2004689-2004861                           29   2.5  
04_04_0311 - 24309411-24309525,24309627-24309841                       29   4.4  
07_03_0124 - 13723597-13724657,13726179-13726413                       28   7.7  

>08_02_1102 +
           24319569-24319917,24320120-24321496,24321819-24322001,
           24322147-24322460,24322515-24322631,24323057-24323313,
           24323504-24323684,24323802-24324074,24324535-24324729
          Length = 1081

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 325 VFASN-KGSTSTENFQEFLFQKRDYFNFDSAKSEETIRFVTSYDYAHPIPRV 173
           VF  N K  TS+  FQ    Q  D F FD+     ++  V  YD+  P   V
Sbjct: 614 VFTCNGKSKTSSIKFQTLEPQWNDIFEFDAMDDPPSVMNVHVYDFDGPFDEV 665


>04_01_0176 + 2003707-2004130,2004689-2004861
          Length = 198

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 349 VALNRKADVFASNKGSTSTENFQEFLFQKRDYFNFDSAKSEETIRFVTSYDYAHPIPRVK 170
           VA+   A V  S+  + +T    E L    DY +F+S  S E  R   +       P+V 
Sbjct: 16  VAVGCPAAVAKSSSANAATTEMLELLRDFSDYSSFNSDISSELERLAAAVTPRSDAPQVA 75

Query: 169 IIRVNG 152
            + +NG
Sbjct: 76  AVDLNG 81


>04_04_0311 - 24309411-24309525,24309627-24309841
          Length = 109

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 274 RILESFRSR*ILCCWQTHQLCDSMRRKSIS 363
           R ++  R+R  LC W+T  L  S+RR S S
Sbjct: 58  RCVQRMRARRELCSWRTRNLWGSLRRGSTS 87


>07_03_0124 - 13723597-13724657,13726179-13726413
          Length = 431

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 30  SGVSPVAFNFDISSIFGSSGRVGKLILFPTCVVLSSLHISRPL 158
           S +    F   +SS+ G SG  G    FP C++L SL    PL
Sbjct: 371 SAIVSGVFGVGLSSLIGVSG--GDYTSFPLCILLQSLAALVPL 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,271
Number of Sequences: 37544
Number of extensions: 321876
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)