Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J08
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF003130-12|AAB54128.2|  175|Caenorhabditis elegans Hypothetical...    27   9.1  
AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical...    27   9.1  
AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 143 YFASIDSYNLNTRYRMGIIVRCNKPYSFFTLC 238
           Y +  +  N    Y + I+ R NKP  +FT+C
Sbjct: 176 YISISEKLNETPEYSVPIVPRLNKPPHYFTVC 207


>AF003130-12|AAB54128.2|  175|Caenorhabditis elegans Hypothetical
           protein F55A12.2a protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 382 PEIVEDYLWIYVALNRKADVFASNKGSTSTENFQEFL 272
           P +   YL  YV +NR+A+   S++      N  EFL
Sbjct: 123 PMLATPYLAHYVLINREANTGGSSRAMPVVNNLLEFL 159


>AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical
           protein F55A12.2b protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 382 PEIVEDYLWIYVALNRKADVFASNKGSTSTENFQEFL 272
           P +   YL  YV +NR+A+   S++      N  EFL
Sbjct: 123 PMLATPYLAHYVLINREANTGGSSRAMPVVNNLLEFL 159


>AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical
           protein F55A12.2c protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 382 PEIVEDYLWIYVALNRKADVFASNKGSTSTENFQEFL 272
           P +   YL  YV +NR+A+   S++      N  EFL
Sbjct: 180 PMLATPYLAHYVLINREANTGGSSRAMPVVNNLLEFL 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,168
Number of Sequences: 27780
Number of extensions: 294034
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)