Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_J06
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 317 1e-87
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.87
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.5
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.0
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.0
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 317 bits (778), Expect = 1e-87
Identities = 156/222 (70%), Positives = 179/222 (80%)
Frame = -2
Query: 699 AVNNISKKRKFVGDGVFKAELNEFLXRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 520
A ISKKRKFV DGVF AELNEF REL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 519 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 340
EKGRRIRELT++VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63 EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122
Query: 339 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 160
GVLR++ME+GA+GCEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182
Query: 159 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 34
VLG+KVKIMLP + K KK PD ++V +PK+E +P
Sbjct: 183 VLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 0.87
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 163 RSTRNQGQNHVAVGPAR----QERPEEATTRPHPGNRAQGRARAPRADQRSALPXAR 5
R T+ Q + V R QE EE+T P + GR+R R ALP R
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALPGLR 588
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 333 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 178
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 430 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 326
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 430 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 326
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 430 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 326
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 549 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 373
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 372 IG 367
+G
Sbjct: 784 LG 785
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 268 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 179
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 93 PQPDHILVTEPKDEPVPLEPTSEVRSLAPAP 1
P P ++V P P+P+ P + + P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 60 KDEPVPLEPTSEVRSLA 10
K+ PVPLEP EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,347
Number of Sequences: 5004
Number of extensions: 60735
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -