Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J04
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    30   1.1  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    30   1.4  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    29   1.8  
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429...    29   2.4  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   3.2  
09_01_0029 - 490433-490591,490930-491019,491860-492608,492996-49...    29   3.2  

>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 142 KNSKHCKITISILFKADKKMQSMSPRFTIAMILGYIDEIRLDYVNM 279
           KN   CK  ISIL KA K  ++ +    + M++ Y+D +    +N+
Sbjct: 76  KNLNWCKFVISILQKATKAGKTTNSACLLYMMILYLDSLSFKNLNV 121


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 142 KNSKHCKITISILFKADKKMQSMSPRFTIAMILGYIDEIRLDYVNM 279
           KN   CK  ISIL KA K  ++ +    + M++ Y+D +    +N+
Sbjct: 240 KNLNWCKFVISILQKAAKAGKNTNSSCLLYMMILYLDSLSFKNLNV 285


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 142 KNSKHCKITISILFKADKKMQSMSPRFTIAMILGYIDEIRLDYVNM 279
           KN   CK  ISIL KA K  ++ +    + M++ Y+D +    +N+
Sbjct: 344 KNLNWCKFIISILQKAAKAGKNTNSACLLYMMILYLDSLSFKNLNV 389


>08_02_0685 +
           20039318-20040433,20040574-20040982,20042906-20042973,
           20043336-20043518,20043641-20043964,20045653-20045694
          Length = 713

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 417 GFLN-GYLVLKVGHFFKLLP*ETVLFISRY 503
           GF N GYL L VGHFF ++P   VL + R+
Sbjct: 465 GFKNVGYLWLAVGHFFLIIP-YAVLRLRRF 493


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +2

Query: 44   NLLNLFSATVATG*IFKKALKV---IGINSEIKKDEKTVSTAKSQ*VSYL---KLIRKCN 205
            N  NLF    + G + ++ LK+   + INS + K+EK +  A  Q +  L   K  R+CN
Sbjct: 989  NAHNLFGEMSSQGEVSQEDLKISKAVPINSPMNKEEKMMDEALDQILEKLEQMKTKRRCN 1048

Query: 206  Q 208
            +
Sbjct: 1049 E 1049


>09_01_0029 -
           490433-490591,490930-491019,491860-492608,492996-493047,
           493175-493276,493363-493494,493882-494109,494172-494321
          Length = 553

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 142 KNSKHCKITISILFKADKKMQSMSPRFTIAMILGYIDEIRLDYVNM 279
           KN   CK  IS L KA K  ++ +    + M++ Y+D +    +N+
Sbjct: 95  KNLNSCKFVISTLQKATKAGKNTNSACLLYMMILYLDSLSFKNLNV 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,869,374
Number of Sequences: 37544
Number of extensions: 197764
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)