Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J04
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 130 YFTIYSNNFQRLFKN 86
           Y   Y+NN+++L+KN
Sbjct: 105 YNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 130 YFTIYSNNFQRLFKN 86
           Y   Y+NN+++L+KN
Sbjct: 105 YNNNYNNNYKKLYKN 119


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 459 KSAPLSALNNRSKIHQNGASIGTG 388
           + +PL ++ NRS +    ++ GTG
Sbjct: 376 RMSPLPSIRNRSGLVSGSSTPGTG 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,990
Number of Sequences: 438
Number of extensions: 2591
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)