Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J03
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    81   2e-16
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   8.4  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -1

Query: 510 VRNYADA-PKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGV 334
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  GIL  HVP +  L+PGV
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGV 77

Query: 333 VTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSE 166
           +++ +    ++K F+S G       + + +   EA+ LE    S A + L K ++E
Sbjct: 78  ISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAE 133


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 713 TASTYLIRLTIGNLNELMVYVPVLLSEIGKKIAES 609
           TA T L+R T  N N   +  P+L S  G+K+ +S
Sbjct: 215 TAGTDLVRRTHPNANVYALTTPLLTSSSGQKLGKS 249


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 432 KQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 310
           + V+ +++VP  +    I P  VP L  L       LE DG
Sbjct: 427 ESVLPEVNVPPITTFSIIRPSRVPALRFLAAPATRTLERDG 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,698
Number of Sequences: 5004
Number of extensions: 50558
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)