Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J02
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    50   4e-07
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    49   8e-07
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    48   1e-06
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.50 
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   6.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.2  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = -1

Query: 715 LGXKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKXQKKTLEDVVQPIIAKLY 554
           L  KV   DK  +++A+   I+WL+ N  A  +EY+ ++K LE V  PI+AK+Y
Sbjct: 556 LKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIY 609


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -1

Query: 715 LGXKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKXQKKTLEDVVQPIIAKLY 554
           L  KV   DK  +++A+   I+WL+ N  A  +E++ ++K LE V  PI+AK+Y
Sbjct: 556 LKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIY 609


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -1

Query: 718 KLGXKVTDDDKAKMEEALDAAIKWLE-DNQDAESEEYKXQKKTLEDVVQPIIAKLY 554
           +LG KV  +DK  + +A++   +WLE   +DA  EE++ Q++ L+ VV PI  KLY
Sbjct: 586 QLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = -1

Query: 703 VTDDDKAKMEEALDAAIKWLEDNQDAESEEYKXQKKTLEDVVQPIIAK 560
           V D+   + E+ L+  ++ ++ N+  ESE+YK  +++L  V + ++A+
Sbjct: 36  VVDEYSKESEDVLENGLEHVQSNEFTESEDYKSIERSLA-VTEAVMAR 82


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +3

Query: 174 LNRLMLSISMLTNTQLTIAFTKNTK--CTF----FYRNRRTSH 284
           LNR++ SI  +T+ ++   F+ + +  C F    FYRN+  SH
Sbjct: 141 LNRMLKSIRDMTDDKVIYGFSLSYRIMCRFNSGFFYRNKALSH 183


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +2

Query: 164 YRKTESTDVINLHVNKHTINYCFY*KYKMHIFLQKQAHVSLTHACATADTRSDLDSVRFV 343
           Y+K  + + ++ H    T +  F+ +  +HIF   Q  +S+   C     R DL  ++  
Sbjct: 540 YKKLNTPNYVDQHAMIRTDSAAFHSRRYIHIFHHIQFMLSI--PCVAEIVREDLKFLKQY 597

Query: 344 AHAHSL-HSYNKYTHSS*QH 400
           A   +L      YT +  QH
Sbjct: 598 ADFFNLFQGMCPYTRAVSQH 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,932
Number of Sequences: 5004
Number of extensions: 44234
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)