Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J02
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    26   0.41 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 257 FLQKQAHVSLTHACATADTRSDLDSVRF---VAHAHSLHSYNKYTHSS*QHCIHPCVGHS 427
           FL+K    +L  A     +R  L S+ F    +  +  H  + Y H+    CIH  +GH 
Sbjct: 286 FLKKNTGFTLRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPY-HTPEPDCIHELLGHM 344

Query: 428 P 430
           P
Sbjct: 345 P 345


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 534  RPRGRRKMTTSRTSCNQTESQPNVISAQMAA 442
            RP  RR++  + T C+   SQ  VI + M +
Sbjct: 962  RPAYRRRLNVNETVCSDYFSQGGVIESIMVS 992


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 162 DTGRLNRLMLSISMLTNTQLTIAFTKNTKCTFFYR 266
           D   +N+L+   S +++  L +   K  KC   Y+
Sbjct: 93  DENGVNKLITECSAISDADLAVKSAKLLKCIGKYK 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,396
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)