Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I24
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 215 6e-57
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 213 2e-56
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 29 0.70
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 1.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 1.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.1
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.7
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 6.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.6
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 8.6
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 215 bits (525), Expect = 6e-57
Identities = 107/239 (44%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Frame = -3
Query: 743 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 564
YRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 563 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 384
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA D
Sbjct: 109 ALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASD 168
Query: 383 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 204
GGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 169 GGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIA 228
Query: 203 LGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNKNQAK 33
G+ +D +E IY +A+ IR DPS +K K+ + ++ +RKLT ERK + AK
Sbjct: 229 DGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 213 bits (521), Expect = 2e-56
Identities = 107/239 (44%), Positives = 149/239 (62%), Gaps = 2/239 (0%)
Frame = -3
Query: 743 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 564
YRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 563 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 384
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA D
Sbjct: 109 ALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASD 168
Query: 383 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 204
GGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 169 GGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIA 228
Query: 203 LGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNKNQAK 33
G+ +D +E IY +A+ IR DPS +K K+ + + +RKLT ERK + AK
Sbjct: 229 DGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 29.1 bits (62), Expect = 0.70
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = -3
Query: 137 PSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEGFLHXRDCR 3
P ++ E D+++ +++L +A+ + K +E ++H +CR
Sbjct: 136 PETEEFEEDNDTMEMAYATRQRLKMADERTKKMTREEYVHWSECR 180
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 185 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQ 39
++E+ K EA + + +KKE KK+ K+K+ K K E+K K++
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK---KEKKKKSE 474
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = -3
Query: 260 SLEQDDE-DSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 84
SLEQD + FK Q Y + D IE + + + ++ K ++K K +
Sbjct: 116 SLEQDPKFQEFKVQRESYSQTASNDDVIEKL-QTSTPLLQYLAEKKNAVVEKGKSKPSKK 174
Query: 83 N---KRKLTLAERKNKNQAKEG 27
+ K+KL LAE+ N +K G
Sbjct: 175 SVKAKKKLRLAEKPASNNSKAG 196
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 155 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEGFLH 18
E I PS K+K+ KK+ K+K KR A + K K+ H
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKSH 497
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 251 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 90
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 557 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 649
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 179 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKE 30
EA K+ + ++ + K++EL++ QKR K+K E+K K Q +E
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQE 681
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3
Query: 194 TADAIEAIYKKAHEAIRADPSHKKKELK 111
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 158 HEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEG 27
HE RA +KKE + ++V++KR NK ++ K+Q KEG
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENK-------KRRKDQKKEG 367
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -3
Query: 320 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 141
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 140 DPSHKKKE 117
+ KKE
Sbjct: 419 SSENNKKE 426
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 140 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEG 27
DPS K K K + ++W + LT A R ++G
Sbjct: 18 DPSKKYKPFKGIQLPNRQWPNKVLTKAPRWLSTDLRDG 55
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 275 AEYMRSLEQDDEDSFKRQFSKYIK 204
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,069
Number of Sequences: 5004
Number of extensions: 54843
Number of successful extensions: 252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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