Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I24
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   237   7e-63
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   233   9e-62
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote...    34   0.087
At4g40020.1 68417.m05666 hypothetical protein                          32   0.46 
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin...    31   1.1  
At4g33690.1 68417.m04785 expressed protein                             30   1.4  
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    29   2.5  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    29   2.5  
At3g01160.1 68416.m00020 expressed protein                             28   7.5  
At1g32810.1 68414.m04044 expressed protein                             28   7.5  
At3g27025.1 68416.m03381 expressed protein                             27   9.9  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    27   9.9  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  237 bits (579), Expect = 7e-63
 Identities = 115/233 (49%), Positives = 155/233 (66%)
 Frame = -3

Query: 743 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 564
           YR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG      
Sbjct: 49  YRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARR 108

Query: 563 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 384
                              ++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+D
Sbjct: 109 VLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALD 167

Query: 383 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 204
           GGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK
Sbjct: 168 GGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227

Query: 203 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNK 45
            GV A++IE +YKK H AIRA+P+HKK E K    + KR+N +KLT  ERKNK
Sbjct: 228 KGVEAESIEEMYKKVHAAIRAEPNHKKTE-KSAPKEHKRYNLKKLTYEERKNK 279


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  233 bits (570), Expect = 9e-62
 Identities = 114/233 (48%), Positives = 154/233 (66%)
 Frame = -3

Query: 743 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 564
           YR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG      
Sbjct: 49  YRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARR 108

Query: 563 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 384
                              ++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+D
Sbjct: 109 VLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALD 167

Query: 383 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 204
           GGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK
Sbjct: 168 GGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227

Query: 203 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNK 45
            GV A++IE +YKK H AIRADP + KK +K    + KR+N +KLT  ERKNK
Sbjct: 228 KGVEAESIEELYKKVHAAIRADP-NPKKTVKPAPKQHKRYNLKKLTYEERKNK 279


>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 189

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
 Frame = -3

Query: 308 VHRAHIFGLHVAE-YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAD-P 135
           +H +++ G+H    Y ++ E+    S     + ++KL    +  EA  K+  E  R D  
Sbjct: 87  IHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKKEN-EAKKKEEEEKERKDME 145

Query: 134 SHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAK 33
             +KK+ K+D  K K   K+     E+K K + K
Sbjct: 146 KEEKKKDKEDKKKDKEDKKKAKVQKEKKEKKEKK 179


>At4g40020.1 68417.m05666 hypothetical protein
          Length = 615

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -3

Query: 338 DAESKKFNAEVHRAHIFGLH--VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 165
           + E  K N  V   +I  L   ++E   ++E++ + S  RQ S      +  + +E + K
Sbjct: 343 EIERVKVNEAVANDNIKKLKKMLSEIEVAMEEEKQRSLNRQES------MPKEVVEVVEK 396

Query: 164 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKEGF 24
           K  E  + +   + K+ KK+S K+K+ +  K    +++ K Q  + F
Sbjct: 397 KIEEKEKKEEKKENKKEKKESKKEKKEHSEK--KEDKEKKEQTHQNF 441


>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 287

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 212 YIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAK 33
           YIK  V   A E I  K  E  + +   KKK+ ++D  K+K   K+K    +++ +N+ K
Sbjct: 166 YIKKKVHKHA-EIISSKTEEEKKKEEEDKKKKEEEDK-KKKEDEKKKEEEKKKEEENKKK 223

Query: 32  EG 27
           EG
Sbjct: 224 EG 225


>At4g33690.1 68417.m04785 expressed protein 
          Length = 281

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 179 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 72
           E +YK+AH   R    HKKK  KK   K+K+ +++K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 162 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 64
           SP SHP  S+ Q+ + ++ + QT+ L Q Q  I
Sbjct: 96  SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 162 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 64
           SP SHP  S+ Q+ + ++ + QT+ L Q Q  I
Sbjct: 96  SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128


>At3g01160.1 68416.m00020 expressed protein
          Length = 380

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 167 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNKNQAKE 30
           K+ HE      S K K + KDS K+K  N    +   ++ K +AK+
Sbjct: 331 KERHELTSTVKSLKMKMMNKDSEKKKAGNPASSSTLAQRIKKKAKD 376


>At1g32810.1 68414.m04044 expressed protein
          Length = 654

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 83  NKRKLTLAERKNKNQAKEGFLHXRD 9
           +K   T + RKNK+ +KEG+ + RD
Sbjct: 349 SKDHTTFSRRKNKDTSKEGYCNLRD 373


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -3

Query: 224 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 105
           Q   YI+   T DAI+ ++KK H A    R D      S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 311 EVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 192
           E HR H  G  V      L+ DD +S++    + +K+ +T
Sbjct: 502 EFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,192
Number of Sequences: 28952
Number of extensions: 292777
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)