Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I23
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 31 0.15
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 28 1.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.4
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 27 2.4
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 27 2.4
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 3.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 4.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 4.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 5.5
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.5
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 7.2
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 26 7.2
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s... 26 7.2
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 9.6
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 31.5 bits (68), Expect = 0.15
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Frame = -1
Query: 502 SPKDSPIAEMARSPQNNIFISHVGPKLSQKQRKKLAMQGNEPNTSL--NDYLSDKLNIGS 329
SP +S +E +PQ N S P+LS +R+ L + N+ D L I S
Sbjct: 89 SPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSPGTDTSDANLTIQS 148
Query: 328 PTSKPKNPWKLCE--TPIACNSANFK-PVEFDKILTDQKKQKENSSRIMTKSLTLTQLED 158
+ + P +L + TP +N + + +K L + Q + S+ S L L++
Sbjct: 149 IEAPRRAPQRLSDFFTPDGRRVSNIRDSLISEKRLENNIDQVQESALSTASSNRLIDLKN 208
Query: 157 KAIEQLERFYNVHEIDD 107
+ + +E DD
Sbjct: 209 DEVPIFRIPLSDYETDD 225
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 649 KVVQARLKAISNAKEILDEIPTESFTKLTK 560
K ++ RLK+I N ++I I T + TKLT+
Sbjct: 35 KEIEQRLKSIKNIEKITKTIKTVAQTKLTR 64
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 445 ISHVGP--KLSQKQRKKLAMQGNEPNTSLNDYLSDKLNIGSPTS 320
IS++G + S K G + +T L D+L++K+NI +PT+
Sbjct: 121 ISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTA 164
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 409 RKKLAMQGNEPNTSLNDYLSDKLNIGSPTS 320
++ L G +PNTS+ Y DK+ IGS T+
Sbjct: 332 QRSLEYMGLKPNTSIVSYPIDKVFIGSCTN 361
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 2.4
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Frame = -1
Query: 748 ITLSLSNIEKDEKGSKEKQEKWIEVPSSQTKQS--KVVQARLKAISNAKEILDEIPTESF 575
I L IE E+ K+ + E Q QS K+V +++ ++A + +E+
Sbjct: 135 IHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELNGTDS 194
Query: 574 TKLTKXXXXSAMIVV---EPSTSRMSVSPKDSPIAEMARSPQNNIFISHVGPKLSQKQRK 404
+T A I + E + S + + P E A S I+ +GP + +
Sbjct: 195 NPMTLTGMACADICLLRPEEALSSLKTALDSQPNYEEALSNMTTA-ITDLGPDAPSQAKN 253
Query: 403 KLAMQGNEPNTSLNDYLSDK 344
L+ N LND+L++K
Sbjct: 254 ILSSFTNSSTLKLNDHLNEK 273
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 421 SQKQRKKLAMQGNEPNTSLNDYLSDKLNIGSPTSKP-KNP 305
S++ +KKLA+ + +TS+ + + P +KP NP
Sbjct: 442 SERMKKKLALFASSTDTSMQKTIDSSFPLKQPINKPSSNP 481
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 2 YXNILIQNST--FSFWSSVDPLRCRHQKLNATNSDEFIIN 115
Y I +++S SF+ S DP+ + NATNSD F+ N
Sbjct: 1294 YGEIWMRSSANAISFFQSTDPVDM--MRFNATNSDGFLGN 1331
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/96 (21%), Positives = 41/96 (42%)
Frame = -1
Query: 418 QKQRKKLAMQGNEPNTSLNDYLSDKLNIGSPTSKPKNPWKLCETPIACNSANFKPVEFDK 239
+ +R+KL Q + + L+DY G T +P + A + + + FDK
Sbjct: 231 EDEREKLDEQMEDLQSFLSDYKKASRKSGIKTQRP-----IISDGDARYDSFVREMVFDK 285
Query: 238 ILTDQKKQKENSSRIMTKSLTLTQLEDKAIEQLERF 131
++ K ++ L +LED+ I ++E +
Sbjct: 286 RAHPTERTKTEEELAQIEADRLRELEDQRISRMEHY 321
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 81 SFWCLHLNGSTLLQNENVLFCIKIF 7
+FWC LNG + ++E CI +F
Sbjct: 41 AFWCQTLNGQLVEEDEGERNCIFLF 65
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 370 SLNDYLSDKLNIGSPTSKPKNPW 302
SLNDY + + NI SP+S+ P+
Sbjct: 308 SLNDYQAAQSNISSPSSRFPTPY 330
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 418 QKQRKKLAMQGNEPNTSLNDYLSDKLNIGSPTS 320
QK+ KK QGN+PN+ D +L+I P S
Sbjct: 264 QKEEKKTISQGNKPNSRDED---SELSIDVPLS 293
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 196 IMTKSLTLTQLEDKAIEQLE 137
I K L LTQ+ D+AIEQL+
Sbjct: 42 IAEKQLGLTQITDEAIEQLK 61
>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 71
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 551 LQRYDCCRTIHITHVGLSKRFSYCRN 474
LQRY CCR + +THV L ++ C N
Sbjct: 40 LQRY-CCRRMILTHVDLIEKL-LCYN 63
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 771 TFQMRLVILHCLSAILRKTRKALKKSKRNGSRYRHH 664
T RL+ L LS KA KKS +NG + R H
Sbjct: 165 TLSKRLLDL-ALSEKTHSLNKASKKSNKNGDKKRKH 199
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 754 GDITLSLSNIEKDEKGSKEKQEK 686
G ITL + NIEK E G + Q +
Sbjct: 54 GGITLPVKNIEKPEDGEESVQRR 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,327
Number of Sequences: 5004
Number of extensions: 67176
Number of successful extensions: 263
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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