Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I23
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0026 + 193383-194566,195726-195972,196099-198063                 31   1.1  
04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335     31   1.1  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 30   2.5  
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    29   4.4  
10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056     29   4.4  
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237...    28   7.6  
03_05_0799 + 27809301-27811550                                         28   7.6  

>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 271  SANFKPVEFDKILTDQKKQKENSSRIMTKSLTLTQLEDKAIEQL 140
            S NFKP +FDK+  D  ++  N  R    S  + +++  A+EQ+
Sbjct: 1018 SINFKPFDFDKLADDMLQEFSNILRKNLGSECMLEIDVGAMEQI 1061


>04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335
          Length = 278

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 409 RKKLAM-QGNEPNTSLNDYLSDKLNIGSPTSKPKNPWKLC 293
           RK L   QG  PN   + ++  +  + SP S PK  W LC
Sbjct: 112 RKTLVFYQGRAPNGVKSGWVMHEFRLDSPHSPPKEDWVLC 151


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 271  SANFKPVEFDKILTDQKKQKENSSRIMTKSLTLTQLEDKAIEQL 140
            S NFKP +FDK+  D  ++  N  R    +  + +++  A+EQ+
Sbjct: 1017 SINFKPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAMEQI 1060


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 367 LNDYLSDKLNIGSPTSKPKNPWKLCETPIACNSANFKPVEFDKILTDQKKQKENSSRIMT 188
           + DYL  KLN GSP  +  +   + E  +    +     + D  ++ + ++ ENSS   +
Sbjct: 621 IKDYLWAKLNNGSPGKELHDMDDIYEEYVVQEKSQGTDSDLDHQIS-RTEEFENSSLSFS 679

Query: 187 KSLTLTQLEDKAIEQLERFYNVHEI-DDEL 101
            S  L+ LE ++         VH+I  DEL
Sbjct: 680 DSSDLSTLETESTSFNSGIGTVHQITTDEL 709


>10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056
          Length = 324

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 409 RKKLAMQ-GNEPNTSLNDYLSDKLNIGSPTSKPKNPWKLC 293
           RK L    G  PN     ++  +  + +P S+PK  W LC
Sbjct: 113 RKTLVFYLGRAPNGQKTTWVMHEFRLETPNSQPKEDWVLC 152


>06_03_1309 +
           29223197-29223240,29223358-29223592,29223695-29223783,
           29223870-29223968,29224065-29224158,29224297-29224514,
           29224861-29224967,29225298-29225472,29225596-29225743,
           29226548-29226596,29228016-29228162,29229990-29229996,
           29230417-29230482,29230773-29231991,29232073-29233149,
           29233226-29233355,29233519-29233617,29233817-29233878,
           29234429-29234533
          Length = 1389

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 706 SKEKQEKWIEVPSSQTKQSKVVQ 638
           +K  Q KW+  PS+ TKQ++ VQ
Sbjct: 92  AKPFQNKWVRDPSAPTKQTEAVQ 114


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 505 VSPKDSPIAEMARSPQNNIFISHVG---PKLSQKQRKKLAMQGNEPNTSLNDYLSDKLNI 335
           +SP  SP AE ARSP   + ++      P++   ++K+  +  + P+   + Y SD+  +
Sbjct: 210 LSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRM 269

Query: 334 GSPTSKP 314
            S   +P
Sbjct: 270 YSFKIRP 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,227,491
Number of Sequences: 37544
Number of extensions: 372330
Number of successful extensions: 1164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)