Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I22
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    67   1e-12
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    67   1e-12
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   7.7  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = -3

Query: 206 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNRRFVNVVQTFGRRRGPN 36
           GKVHGSLARAGKVK QTPKVE         GRA +R+ Y RRFVNV    G +R  N
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMN 58


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = -3

Query: 206 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNRRFVNVVQTFGRRRGPN 36
           GKVHGSLARAGKVK QTPKVE         GRA +R+ Y RRFVNV    G +R  N
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMN 58


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 465 IRPADDLSGLVDKILQYAVAYQRAIDTRPGRQWP 364
           I P  +LS  VDK LQ+ +  + ++       WP
Sbjct: 195 IAPLKELSHCVDKSLQFYLVAEDSVQLAEYPSWP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,678
Number of Sequences: 5004
Number of extensions: 25458
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)