Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I17
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.6  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   4.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.8  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 24/112 (21%), Positives = 41/112 (36%)
 Frame = -2

Query: 424 DNVHLNEDEREKANWYTAECGVETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILN 245
           D  HL +  RE     TA C  +T     +    +  + S     K+F  C +   +  N
Sbjct: 53  DAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYNN 112

Query: 244 SDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFASLQCXHKG 89
            + T  +   L      +N+  +Q  L+    ++G D     F  + C   G
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYG 164


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 541 TV*SQLS*YVWRSPSSTAEPIMKSVVLICLAFAVFNCGADNVHLNE 404
           TV   +  +V    SST  PI  +  + CL    F C      LNE
Sbjct: 201 TVFEDIMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELLNE 246


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 180 KPKAY*NSARIRPAKTQPIKPLRAYNAXTK 91
           KPK   +SA  +PA+T P+KP R     TK
Sbjct: 376 KPKIK-SSAPSKPAETAPVKPPRIELENTK 404


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 301 DKAFKKFVLCFFKKSAILNS 242
           DKA K++V CF K   I+ S
Sbjct: 352 DKATKQYVSCFLKVDGIMRS 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,226
Number of Sequences: 5004
Number of extensions: 37936
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)