Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I17
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    30   1.5  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    29   2.0  
08_02_0082 + 12059692-12060209,12060484-12060973                       29   2.6  
01_05_0514 - 22876264-22878567                                         28   6.0  
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           27   8.0  

>04_04_1299 + 32450998-32451134,32451575-32452304,32452856-32453053,
            32453398-32454065,32454555-32454978,32455917-32456009,
            32456101-32456295,32456378-32456470,32456718-32456930,
            32457015-32457104,32457239-32457400
          Length = 1000

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 514  VWRSPSSTAEPIMKSVVLICLAFAVFNCGADNVHLNEDEREKANWYTAE 368
            +   P+ +A+ + KS+V+ C++   +     NV L  D +   NWY A+
Sbjct: 953  ILEGPTESAD-LAKSIVVECMSKPFYGTNILNVELAVDAKCAQNWYAAK 1000


>01_06_0293 -
           28254673-28254878,28255189-28255306,28255767-28255961,
           28256701-28256800,28256887-28256972,28257078-28257239,
           28257965-28258101,28258233-28258281,28258688-28258746,
           28258862-28258896,28259384-28259433,28260173-28260332,
           28260898-28260963,28261065-28261162,28261649-28261696,
           28262114-28262242,28262667-28262769,28262858-28262954,
           28263181-28263241,28263659-28263740,28263845-28263962,
           28264039-28266325
          Length = 1481

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 33  MPNL-IXSLELX*NQICVLVPLXKHCKLAKALSAASWPVLFLHCSSTLWASDLLTPEGSF 209
           MPNL + S     + +C+ +P+ K+  +  A   A  P  +LH + T    DL+  E   
Sbjct: 733 MPNLCVQSYVAQADSVCISLPIEKYLPIEHACWTAGQPAPYLHLARTF---DLVEREKGK 789

Query: 210 ASATTM 227
              T M
Sbjct: 790 IKTTAM 795


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 90  PLXKHCKLAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLK 269
           PL +H     A+SAA    +   C    W S++  P     +    F   ++  +   L+
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAP--GVVAVHRSFAPRADDVLVASLQ 90

Query: 270 KQSTNFLKALS 302
           K  T +LKAL+
Sbjct: 91  KSGTTWLKALT 101


>01_05_0514 - 22876264-22878567
          Length = 767

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 105 CKLAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLKKQSTN 284
           C+LA  L   S      + S TLW  DL+   G+  S T  + +     +A  L      
Sbjct: 331 CELA-CLGNCSCTAYSYNGSCTLWYGDLINLRGANGSGTDGYRISIRLGVASDLSGTGNT 389

Query: 285 FLKALSLEYFPIFAAFIT-SVLTPV 356
               + L    + AA +T +VL  V
Sbjct: 390 KKMTIGLVVAGVVAAAVTLAVLVAV 414


>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = -2

Query: 442 VFNCGADNVHLNEDEREKANWYTAECGVETGVST-EVI-NAAKIGKYSKDKAFKKFVLCF 269
           V+N G+    +N +E  +        G   G++  E + NAAK   Y + K   K ++C 
Sbjct: 39  VYNDGSGEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCE 98

Query: 268 FKKSAILNSDGTLNMVVALAKLPSGVNKSE 179
           F K     S GT    +   K P    K +
Sbjct: 99  FGKVTKKPSKGTKRKKLEKTKKPKDSKKPD 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,178
Number of Sequences: 37544
Number of extensions: 232036
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)