Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I17
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    28   4.1  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosi...    27   7.2  
AF003133-1|AAB54137.2|  207|Caenorhabditis elegans Hypothetical ...    27   7.2  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   9.5  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 275 KHEFLKSFIFGVLSNLRCIYHF 340
           K+EFLKS I   L NL C+ HF
Sbjct: 231 KNEFLKSHIHSKLRNLMCMLHF 252


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 280 VLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADK 122
           V+CF+K++ I N D      +   K+   +   EAQ++  + K K  +D   K
Sbjct: 806 VVCFYKRNKIANDDMEQGTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAK 858


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = -2

Query: 400 EREKANW-YTAECGVETGVSTEVINAAKIGKYSKDKAF-KKFVLCFFKKSAILNSDGTLN 227
           +R+   W    +C  E G   +V  +++     K K   K+ +    KK++I   D    
Sbjct: 575 DRDSEAWDVIRKCLDEDGKEKKVAGSSRKNIRKKKKRMTKQQITDILKKASI---DDVEQ 631

Query: 226 MVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFASL 107
              AL ++   + KS +Q    + KNK  QDA+ +A  +L
Sbjct: 632 HYKALQQIMDDIVKSLSQKDPNRDKNKASQDASKEALNNL 671


>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 225 WLLR*QNFLLVLINLKPKAY*NSARIRPAKTQP 127
           W+ R   +LLV++ LKP +Y ++A +    +QP
Sbjct: 148 WVYRFWRWLLVMLKLKPASYASAAEMAWGTSQP 180


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
            F48F5.1 protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 211  AKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFASLQCXHKGTKTQ 77
            AKL +   KSEA+ V E+ K++  Q   DK  A L+   + ++ +
Sbjct: 876  AKLRADQEKSEARKVAEKKKDEQNQKEKDKLQAKLRADQEKSEAR 920


>U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosis
           protein familyprotein 1 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = -2

Query: 403 DEREKANWYTAECGVETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILNSDGTLNM 224
           D   +A++  ++  +E  V   + NA  I ++ +   F+ F+L  F K   +N+D     
Sbjct: 13  DTGSEASYKVSQVEIED-VEENLKNADVIFEHLEQLPFQVFILSEFGKPIFVNNDRNEGE 71

Query: 223 VVALAKLPSGVNKSEAQSVLEQCKNKTGQD 134
           +V+L  L      S  QS  +     T QD
Sbjct: 72  IVSLVALICAF-VSRCQSWGDSLMTMTSQD 100


>AF003133-1|AAB54137.2|  207|Caenorhabditis elegans Hypothetical
           protein T21E3.2 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 105 CKLAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLKKQST 281
           C  A+ +    W V+F+ CS T  AS +   +   +S TT     ++      + K ST
Sbjct: 3   CIFAELILFVVWTVMFISCSKTSQASKVEEKKPKTSSITTKTITSADLADKTDVSKTST 61


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -2

Query: 361 VETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKS--AILNSDGTLNMVVALAKLPSGVN 188
           +   V +E +N +KI  YS   AF   +     K   ++LNS       VAL      +N
Sbjct: 657 IMNNVDSEAVNTSKISTYS---AFNLSINQSISKRRRSLLNSARESPRRVALENSIMSMN 713

Query: 187 KSEAQSVLEQCKNKTGQDAAD 125
               +++ E  +NKT Q + D
Sbjct: 714 GQTMEALTEYRQNKTMQTSQD 734


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,098
Number of Sequences: 27780
Number of extensions: 214373
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)