Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I16
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 29 0.22
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 0.68
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 27 0.68
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 2.1
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 2.7
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 4.8
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 24 6.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 24 6.3
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 24 6.3
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 29.1 bits (62), Expect = 0.22
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 206 LLNIKSSRLYCETLLKYLLQPTWWNIVFLKLI 111
L N K S + L KY+L+P WWN LK+I
Sbjct: 11 LHNYKYSAIDNSLLSKYILKPYWWN-QLLKVI 41
Score = 24.6 bits (51), Expect = 4.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 272 PIYNMKCLKSVMXKTKVWTFDVLLNIKSSRLYC 174
P +N+ L ++ +TF VL N+++ +C
Sbjct: 314 PYWNVLILPFLVDAVDAYTFGVLKNVQTEYFFC 346
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 0.68
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 248 KSVMXKTKVWTFDVLLNIKSSRLYCETLLKYLLQPTWWNIVFLKL 114
K++ + WTFD ++ +K SRL E + L P W + L+L
Sbjct: 515 KNIQTGSIFWTFDDIIGLKDSRLKKEKKIPKKL-PFWKKYLELQL 558
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 27.5 bits (58), Expect = 0.68
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 215 FDVLLNIKSSRLYCETLLKYLLQPTWWNIVFLKLICL*IVDKKNF 81
F V+L + CE + +Y+ + W++VFL + ++++NF
Sbjct: 286 FLVILQDCENAAACERIFEYVFYLSSWSLVFLLTLPATTINRENF 330
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 2.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 1 SQFSIHPFXFIFVSNLLVGTIIT*YYMKFFLSTIYKHINFKNTMFHQVGCNKYFNNV 171
S FSI F ++ L+ G+ K L + YK+I T F CN + V
Sbjct: 938 SDFSISQFCYLKKLLLVHGSWCYQRLSKLILYSFYKNIALYMTQFWYAFCNAFSGQV 994
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 2.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -1
Query: 326 RLIXLELTYLYCTNCHRRPIYNMKCLKSVMXKTKVWTFDVLLNIKSSRLYCETLLKYLLQ 147
RL ++ LY + RP++NM L S++ +T V + + N + K + +
Sbjct: 316 RLSTIQAALLYLIS---RPLHNMYSLSSILSRTTVLSQLLGFNHDCTEWKIPNEEKTIRK 372
Query: 146 PTWWNI 129
WW I
Sbjct: 373 RIWWAI 378
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 4.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 100 IYKHINFKNTMFHQVGCNKYFNNVSQ*RRLDLMFNKTSKVHTLVXFITDFKHFIL 264
I++ I+F +F + C+ Y + R LD MFN T DF+ F +
Sbjct: 589 IHRAISFFYRIFVKQKCHVYLYRLDFLRVLDKMFNDHVYFSTTNSARQDFEQFFV 643
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 275 RPIYNMKCLKSVMXKTKVWTFDVLLNIKSSRL 180
RP+Y + L+ ++ KT + D+LL + +
Sbjct: 794 RPLYVISHLRPLLHKTSLGVGDILLEVNGKMI 825
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 103 YKHINFKNTMFHQVGCNKYFNNV 171
Y HI N++ + CNK+F NV
Sbjct: 46 YCHIKNPNSILKCLHCNKWFCNV 68
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -1
Query: 218 TFDVLLNIKSSRLYCETLLKYLLQPTWWNIVF 123
+F +++K +Y E++L+Y L P + +++F
Sbjct: 295 SFQGWIHLKCLCVYVESILRYGLPPDFSSVIF 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,661
Number of Sequences: 5004
Number of extensions: 25140
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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