Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I15
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35221| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.41 
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             26   8.7  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            26   8.7  

>SB_35221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 14  YHIHRNSIAXKIAFWLSIXARRQCXGPSRCRQNSQEVSRRNMQSTQQVKYTQRQ 175
           YHI RN+   +I +W+    +     P   ++  +++ R  +   Q   Y +RQ
Sbjct: 250 YHIQRNTYNYQITYWVQEGFQESYADPQSLQKLEKKIERDYVNRLQTQCYRERQ 303


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 195 SCLHRPSCRCVYFTCCVLCIFRLLT--SWLFC 106
           SCL+R   R V F+CCV  +  + T    LFC
Sbjct: 268 SCLYRAVPRIVSFSCCVRVVLVVSTFVCALFC 299


>SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 32 SIAXKIAFWLSIXARRQCXG 91
          ++A   AFWLS+  R +C G
Sbjct: 25 NVAIVTAFWLSVTGREKCGG 44


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 153 CCVLCIFRLLTSWLFCL 103
           C ++C F LL  WL C+
Sbjct: 559 CLLMCSFALLAHWLACI 575


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 195 SCLHRPSCRCVYFTC 151
           +CL RP+CR +  TC
Sbjct: 287 ACLDRPNCRAIVATC 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,882
Number of Sequences: 59808
Number of extensions: 100978
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)