Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I15
(335 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117184-1|AAI17185.1| 1388|Homo sapiens retrotransposon gag dom... 29 4.7
BC113670-1|AAI13671.1| 1388|Homo sapiens retrotransposon gag dom... 29 4.7
BC101292-1|AAI01293.1| 243|Homo sapiens LOC643699 protein protein. 29 4.7
AY121804-1|AAM82752.1| 1388|Homo sapiens BJ-HCC-23 tumor antigen... 29 4.7
AK131548-1|BAD18682.1| 243|Homo sapiens protein ( Homo sapiens ... 29 4.7
AB037739-1|BAA92556.1| 1418|Homo sapiens KIAA1318 protein protein. 29 4.7
BC107862-1|AAI07863.1| 365|Homo sapiens SNX27 protein protein. 28 8.2
BC101824-1|AAI01825.1| 528|Homo sapiens sorting nexin family me... 28 8.2
BC101822-1|AAI01823.1| 528|Homo sapiens sorting nexin family me... 28 8.2
BC101000-1|AAI01001.1| 528|Homo sapiens sorting nexin family me... 28 8.2
BC100999-1|AAI01000.1| 528|Homo sapiens sorting nexin family me... 28 8.2
BC100998-1|AAI00999.1| 528|Homo sapiens sorting nexin family me... 28 8.2
BC071825-1|AAH71825.1| 367|Homo sapiens SNX27 protein protein. 28 8.2
BC051817-1|AAH51817.1| 283|Homo sapiens SNX27 protein protein. 28 8.2
BC012184-1|AAH12184.1| 219|Homo sapiens SNX27 protein protein. 28 8.2
AY044866-1|AAK97797.1| 435|Homo sapiens sorting nexin 27 protein. 28 8.2
AL589765-6|CAI17169.1| 435|Homo sapiens sorting nexin family me... 28 8.2
AL589765-2|CAI17165.1| 541|Homo sapiens sorting nexin family me... 28 8.2
AL589765-1|CAI17164.1| 528|Homo sapiens sorting nexin family me... 28 8.2
AL391335-3|CAH73503.1| 435|Homo sapiens sorting nexin family me... 28 8.2
AL391335-2|CAH73502.1| 541|Homo sapiens sorting nexin family me... 28 8.2
AL391335-1|CAH73501.1| 528|Homo sapiens sorting nexin family me... 28 8.2
AF060509-1|AAG43127.1| 118|Homo sapiens My014 protein protein. 28 8.2
AB007957-1|BAE16986.1| 523|Homo sapiens KIAA0488 protein. 28 8.2
>BC117184-1|AAI17185.1| 1388|Homo sapiens retrotransposon gag domain
containing 1 protein.
Length = 1388
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 92 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 205
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>BC113670-1|AAI13671.1| 1388|Homo sapiens retrotransposon gag domain
containing 1 protein.
Length = 1388
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 92 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 205
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>BC101292-1|AAI01293.1| 243|Homo sapiens LOC643699 protein protein.
Length = 243
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 77 RQCXGPSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTHTP 211
RQ P + ++ +Q QQVK Q +LG ++ T TP
Sbjct: 154 RQLAKPQSVFEELNNENKSTLQLEQQVKELQEKLGEVKETETSTP 198
>AY121804-1|AAM82752.1| 1388|Homo sapiens BJ-HCC-23 tumor antigen
protein.
Length = 1388
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 92 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 205
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1326 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1363
>AK131548-1|BAD18682.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ16784 fis, clone CTONG2003764, highly similar
to Protein kinase C, delta type (EC 2.7.1.-). ).
Length = 243
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 192 CLHRPSCRCV---YFTCCVLCIFRLLTSWLFCLHLLGP 88
CLHRP C V C LC+ + L + C+H+ P
Sbjct: 162 CLHRPVCTYVPMCAHVCQCLCVCQCLCALRECMHVSFP 199
>AB037739-1|BAA92556.1| 1418|Homo sapiens KIAA1318 protein protein.
Length = 1418
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 92 PSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQLGTH 205
P+ C++N++E + S QQ + Q RC L H
Sbjct: 1356 PTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEH 1393
>BC107862-1|AAI07863.1| 365|Homo sapiens SNX27 protein protein.
Length = 365
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 238 YLNMLRTCEGYNEIIFPHCAC 258
>BC101824-1|AAI01825.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>BC101822-1|AAI01823.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>BC101000-1|AAI01001.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>BC100999-1|AAI01000.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>BC100998-1|AAI00999.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>BC071825-1|AAH71825.1| 367|Homo sapiens SNX27 protein protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 240 YLNMLRTCEGYNEIIFPHCAC 260
>BC051817-1|AAH51817.1| 283|Homo sapiens SNX27 protein protein.
Length = 283
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 169 YLNMLRTCEGYNEIIFPHCAC 189
>BC012184-1|AAH12184.1| 219|Homo sapiens SNX27 protein protein.
Length = 219
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 105 YLNMLRTCEGYNEIIFPHCAC 125
>AY044866-1|AAK97797.1| 435|Homo sapiens sorting nexin 27 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 321 YLNMLRTCEGYNEIIFPHCAC 341
>AL589765-6|CAI17169.1| 435|Homo sapiens sorting nexin family
member 27 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 321 YLNMLRTCEGYNEIIFPHCAC 341
>AL589765-2|CAI17165.1| 541|Homo sapiens sorting nexin family
member 27 protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>AL589765-1|CAI17164.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>AL391335-3|CAH73503.1| 435|Homo sapiens sorting nexin family
member 27 protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 321 YLNMLRTCEGYNEIIFPHCAC 341
>AL391335-2|CAH73502.1| 541|Homo sapiens sorting nexin family
member 27 protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>AL391335-1|CAH73501.1| 528|Homo sapiens sorting nexin family
member 27 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 414 YLNMLRTCEGYNEIIFPHCAC 434
>AF060509-1|AAG43127.1| 118|Homo sapiens My014 protein protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 4 YLNMLRTCEGYNEIIFPHCAC 24
>AB007957-1|BAE16986.1| 523|Homo sapiens KIAA0488 protein.
Length = 523
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 256 YLNMLIKVDSYDQVLFSKCRC 318
YLNML + Y++++F C C
Sbjct: 409 YLNMLRTCEGYNEIIFPHCAC 429
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,839,263
Number of Sequences: 237096
Number of extensions: 485631
Number of successful extensions: 1251
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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