Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I15
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 165 VYFTCCVLCIFRLLTSWL 112
           +Y  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 165 VYFTCCVLCIFRLLTSWL 112
           +Y  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 158 KYTQRQLGRCRQLGTHTPK 214
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 177 SCRCVYFTCCVLCIFRLLTSWL 112
           SC+C+Y     LC+   L  +L
Sbjct: 182 SCKCIYVQSINLCMAGRLFGYL 203



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 62  SIXARRQCXGPSRCRQNSQEVSR 130
           S   RRQ      CR+  ++++R
Sbjct: 438 SFRKRRQREAAGNCRKRGEKIAR 460


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   ILVLYHIHRNSIAXKIAFWLSI 67
           IL+L + HRN+   +++ W+ +
Sbjct: 313 ILILNYHHRNADTHEMSEWVKV 334


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 158 KYTQRQLGRCRQLGTHTPK 214
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 147 VLCIFRLLTSWLFCLHLLGP 88
           ++C+  L+  W  CL  L P
Sbjct: 282 LICMMLLIGHWSGCLQFLVP 301


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 147 VLCIFRLLTSWLFCLHLLGP 88
           ++C+  L+  W  CL  L P
Sbjct: 250 LICMMLLIGHWSGCLQFLVP 269


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 WGGVGNWVLIHQRLCGSKRKNSS 245
           WGG+G  VL    L G+    SS
Sbjct: 563 WGGIGVVVLFAVVLAGATCLGSS 585


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 328 IALCIGILRIILGHTSPL*STCSNIC 251
           + L +  ++  LGH  P  S CS  C
Sbjct: 566 LRLNMSAIQFKLGHPEPPESVCSLPC 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,232
Number of Sequences: 438
Number of extensions: 850
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)