Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I15
         (335 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11200.1 68414.m01283 expressed protein contains Pfam profile...    27   4.1  
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    26   5.4  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    25   9.5  

>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 295

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 192 CLHRPSCRCVYFTCCVLCIFRLLTSWLF 109
           C+ RP C  +  T  +L I+ +  SW+F
Sbjct: 152 CIIRPVCSILMITLQILGIYPVWLSWIF 179


>At5g40820.1 68418.m04956 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           similar to Atr protein [Xenopus laevis] GI:11385422;
           contains Pfam profiles PF00454 Phosphatidylinositol 3-
           and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 319 CIGILRIILGHTSP 278
           C+ ++R ILGHTSP
Sbjct: 768 CVEVIRRILGHTSP 781


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 113 SQEVSRRNMQSTQQVKYTQRQLGRCRQL 196
           S++  RRN+Q  Q ++Y      RC ++
Sbjct: 554 SEDERRRNLQEDQWIRYASILCDRCEEI 581


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,067,872
Number of Sequences: 28952
Number of extensions: 65571
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)