Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I14
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    31   1.1  
At1g71260.1 68414.m08224 expressed protein                             28   5.7  
At5g56120.1 68418.m07001 expressed protein similar to unknown pr...    28   7.5  

>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 315 RNKKCFINLSNIPNKPKKVVNSFFCLCKILFKTV 214
           +NKK   N+   PNKPKK  +S+F  CK   K+V
Sbjct: 359 KNKKKNENVD--PNKPKKPTSSYFLFCKDARKSV 390


>At1g71260.1 68414.m08224 expressed protein
          Length = 238

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 533 VGLGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 417
           + L V NS+L   +  +      EF V  ++FS+  PH+
Sbjct: 165 ISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHI 203


>At5g56120.1 68418.m07001 expressed protein similar to unknown
           protein (dbj|BAA81760.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -3

Query: 740 SNTAIXDSAKVKSCAVCNKDXCXGAGSISFSLPLATFALIATYFVFKQ*FR 588
           S++   D+  VKS AVC K     A S++ SL L  F + A  FVF + +R
Sbjct: 107 SSSCSDDADVVKSNAVCKKWWIPSAVSLATSLVL-VFLVQAKLFVFWKVYR 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,905
Number of Sequences: 28952
Number of extensions: 239889
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)